Query= MSMg01no174_o10.b1 MSMg01no174_o10.b1 CHROMAT_FILE:
MSMg01no174_o10.b1 PHD_FILE: MSMg01no174_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:52 2005
(319 letters)
>mm_chr19_49619401_49620119
Length = 719
Score = 592 bits (306), Expect = e-173
Identities = 312/314 (99%)
Strand = Plus / Plus
Query: 5 gaattctctctgaattatttttcatatccaatataagctaaatgccattaaaagtgcaat 64
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 205 gaattctctctgaaatatttttcatatccaatataagctaaatgctattaaaagtgcaat 264
Query: 65 tgtactatgaggattaatgaaaaaaagcagctgaacatattcaataaaggtatttttctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtactatgaggattaatgaaaaaaagcagctgaacatattcaataaaggtatttttctc 324
Query: 125 cttgttaatttttgaacggcagttgattgaatgtatgagtatggaaacaatgaataaaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttgttaatttttgaacggcagttgattgaatgtatgagtatggaaacaatgaataaaat 384
Query: 185 gatagagtacattttgttatcgcagctaaaaccaaataatatattagtaacaaacatgcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gatagagtacattttgttatcgcagctaaaaccaaataatatattagtaacaaacatgcc 444
Query: 245 taccatgatttgtatggaggttctgcgtagcagcagttatttcagggtcttttattctta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taccatgatttgtatggaggttctgcgtagcagcagttatttcagggtcttttattctta 504
Query: 305 ttgccattcaggta 318
||||||||||||||
Sbjct: 505 ttgccattcaggta 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space: 220100
Effective search space used: 220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no174_o10.g1 MSMg01no174_o10.g1 CHROMAT_FILE:
MSMg01no174_o10.g1 PHD_FILE: MSMg01no174_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:52 2005
(287 letters)
>mm_chr19_49682883_49683570
Length = 688
Score = 526 bits (272), Expect = e-154
Identities = 281/284 (98%), Gaps = 1/284 (0%)
Strand = Plus / Minus
Query: 3 aatgtcatcaaatattctgcaatatttctctctgaagttgctttcagcccatttatcaca 62
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 563 aatgtcatcaaatattctgcaatatttctctctgaagttgctttcagaacatttatcaca 504
Query: 63 gccacagaaaagtaactacacacagaaacttttgccatatccccagccttgtggtggagt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gccacagaaaagtaactacacacagaaacttttgccatatccccagccttgtggtggagt 444
Query: 123 tgccacaacaatctccccttcttcactgtggaagagctatccttcacctggtatctgtag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgccacaacaatctccccttcttcactgtggaagagctatccttcacctggtatctgtag 384
Query: 183 aaaattggacaggaggatatattgtcc-tttttttttttttttttgcatctcttagcatt 241
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 383 aaaattggacaggaggatatattgtccttttttttttttttttttgcatctcttagcatt 324
Query: 242 agatttcaaatatcattaccacagaatgaataattctaatgagg 285
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agatttcaaatatcattaccacagaatgaataattctaatgagg 280
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space: 188762
Effective search space used: 188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
