BAC Information

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BAC

Clone NameMSMg01-174O22
Chromosome19 (Build37)
Map Location 27,715,594 - 27,715,827
singlet/doubletsinglet
Overlap genenone
Upstream geneSmarca2, Gm815, LOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868
Downstream geneLOC100042612, Rfx3, LOC666997, LOC433235, Glis3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174O22.T7 (MSMg01no174_o22.b1)MSMg01-174O22.TJ (MSMg01no174_o22.g1)
ACCAG370083AG370084
length731732
length of high quality
(start - end)
323 (46 - 368)234 (130 - 363)
definitionCHROMAT_FILE: MSMg01no174_o22.b1 PHD_FILE: MSMg01no174_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:54 2005CHROMAT_FILE: MSMg01no174_o22.g1 PHD_FILE: MSMg01no174_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTATTTGGGTGCGTTAGTAGGATAAGCACTTCAGAAAAATCTCC
TCAGTGGATGGAAGCCGAAGAGAAGCCCTAAGTTCCATACCTGCAGATGA
GGAGACTATGGTACTTCAAGCCATACAACTAATTTTATTTCATGGGACTC
TCCAGCACCCTTTCCAGCATGCAGTTGCAGTGTACCAAATTCTGTTTCAT
GGATCATAAACTACCAAGTCCATTTCTGAATTGAAGAGACGGCATTACTG
TAAACCTTTGACCCAGCTGCAGGGACATTTGAACTTTTATATGCACATAC
AGCATACTGACCTACTGTTTTGATTCCTTCCCCCGAGGGCATTCTCAGAT
CTGAAGTCCATTTCGTTCACCAGCATTGTGGGACTATGATAGGCAGCCTA
TTTTGCTTGGATGGGGCTTGTTCTGGCGACCCAGTAGAGAACTCTACAAG
GAACAGAAAAGTGAGCCACGTTCCCAGAGACAGGTGCCTGACACCACAGA
GTCCCCAACTCCATAATTCTGTGACTATGTGACTATCAGTCTTGCAGACA
ATGTCCCAAGCTTCTGGCATTCTGGCTAGACTCTACCCCCACAGTTACCT
GACTATAGTCAGGTATGCTCCTCCACACAGTTACCTGATAGCCCTGCTAT
CATGTAGAGGGGCTGTTTGCCCTCTCCTCGC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGACGNAAACAGCCTTGAAGATGCTTGTATAACCCT
TCCACAAAACCCCCATCTCTCTTCTCCGTATCTCTATTTAATCTAACTAG
GAAGGTTTCTAGTCCTTTGACTATAGTCAAACAAAGGAACACTACACAGG
AGGCGCCTACTAACACGCCCCTTTCCGCCCCAACCACTTGCCTGCTTCCT
GCATCCCCACTGTGCTAGTATTGCCCCCTACAGCCTGCTCTAGCTTGACT
GTGCCTTTGTACCCTGCAGGCTGTCTTTCTGACTAAATTCTTTGTTGTTT
CTCTGCCTACTCATTTTTAATTCCCACCCCCCCCGCCAATTCCTGGAGAC
CTCTTGGGGTGCCTGCCATCTTTTCCAAAGAAAAACATGGCTTCCTTTGA
GCCTACTGTCATTGAAGCTCTGTTTGTATAGCAACAATAGATACATAGAT
TAAGTCTGAGAACACCTTGGGGACTGAACTTCTTCCTGCTGTTCCTGGTT
CCTTCTTAGCAAAACTTGAACCATTGGGGCCCTTCAGTGTTGGCTTTCCA
GTACTTAGGGTTGTGAGCATTCCTGTGAGTTTGTGTGAATTATCACCGAT
AACCTAAAGACTGCCTCAAGAAAGTAAATTATAATCCCAGAACATCTATT
AAAGATCTGGTGTGAGCTCTATTTGTAGGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_o22.g1 MSMg01no174_o22.g1 CHROMAT_FILE:
MSMg01no174_o22.g1 PHD_FILE: MSMg01no174_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:54 2005
         (234 letters)



>mm_chr19_27715394_27716027
          Length = 634

 Score =  437 bits (226), Expect = e-127
 Identities = 232/234 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctctatttaatctaactaggaaggtttctagtcctttgactatagtcaaacaaaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 atctctatttaatctaactaggaaggtttctagtcctttgactatagtcaaacaaaggaa 375

                                                                       
Query: 61  cactacacaggaggcgcctactaacacgcccctttccgccccaaccacttgcctgcttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cactacacaggaggcgcctactaacacgcccctttccgccccaaccacttgcctgcttcc 315

                                                                       
Query: 121 tgcatccccactgtgctagtattgccccctacagcctgctctagcttgactgtgcctttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tgcatccccactgtgctagtattgccccctacagcctgctctagcttgactgtgcctttg 255

                                                                 
Query: 181 taccctgcaggctgtctttctgactaaattctttgttgtttctctgcctactca 234
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 254 taccctgcaggctgtcactctgactaaattctttgttgtttctctgcctactca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)