BAC Information

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BAC

Clone NameMSMg01-177C23
Chromosome19 (Build37)
Map Location 32,382,674 - 32,383,204
singlet/doubletsinglet
Overlap genenone
Upstream genePrkg1, 1810073H04Rik, Asah2, EG668042, Sgms1
Downstream gene2700046G09Rik, LOC100042138, LOC672490, LOC100042823, Minpp1, Papss2, Atad1, Pten, B430203M17Rik, 6530404N21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177C23.T7 (MSMg01no177_c23.b1)MSMg01-177C23.TJ (MSMg01no177_c23.g1)
ACCAG371648AG371649
length710709
length of high quality
(start - end)
665 (42 - 706)532 (76 - 607)
definitionCHROMAT_FILE: MSMg01no177_c23.b1 PHD_FILE: MSMg01no177_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:42 2005CHROMAT_FILE: MSMg01no177_c23.g1 PHD_FILE: MSMg01no177_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGCG
GAATTCTCTGTTTCATCCCTATCCCATGTTTAATGGGATTGTTTGGGTTT
TTGATATCTAATTTCTCAGACTCTGTGAATACTTTGGATATTAGTCTTTT
ATCAGATGTGGAGTTTGTAAAAGTCTTTTCTCATTCTGTAGGCTGCCACT
ATGTCCAAATGACAGTTCTTCGATTTGCAGGAGCTTTCCAATATCATAAA
GTTCCCATTTATTATGCGTTGACTTAGTGCCTGAGCTACTGGTGTTCTGT
TCAGAAAGTCATCTTCTGTAACTATGCAGTCAAGGCTATCCCCCACTTTT
TCTTCTGCCAGGTTCAATGTATGTGGTTTTATGTTGAGGTCTTTGATCCA
CGTTTTGTGCAGGATGATAAGTATGGATCTATTTGCATTCTTCTACATGC
ATACATCTAGTTAGACCAGCATCATTTCTGGAAAAGGCTTTTTTTTCCCC
AATGTGTAATATTGGGTTCTATATAAAAAAATCAGATGTCCATATGTGTA
TGGATTTATCTCTATGTCTTCAGTTCAACTCCATTGATTAGTGTGTCTGT
TTTTATGACAATACCATGCAGTTTTTATTGATAGCTCTATAGCACAACTT
GAAGTTGGGGATGGTAAGATAGCAGCAGTTCTTTTAGTGATCAGGATTGT
TTGAGCTATN
ACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACTCAGCTGGAGAGAAGAGATCAG
ATTCTCACTTCCTTTCTACCTGAGTCAGTTCTCAGAGGGCTACTGTTCTG
AAGGCCAGTGGACTCAACAGTCTGAGGAAAGGTTTCCTTGTTGATCATCT
GTATTTGGTTTGGAAAGGACACTAGCAGTATTCAAGGTTTACAAAGTCAA
TACTGGCACTTTTTCCTGACAGGCAGTCTTCAGATGACAACTTTACGTAT
GGGTGAGAGTAAAAGACCTGTGAGCCTCCTCAAATAGACCCTGTTCAAAA
CAGCAATGATTCACTGCATACAGGGGCCCTGGTGCGCTAGCTTCTGCAGC
TTATTTAAAATGCAAAGTGCTAAAGAAAAAGGCAAATTTCTGGGGCTCAG
AAAGTGTGACTCAGTAAGCAGTACAGGTGGGTGTTGAGGTTTTTTGTTTT
TAACTGTCTATTGTAATGCTAAGTGCGGCCCCCAAAACCTGGAGTTTGTA
CATAGCTCCTGGGACCCTGCTACCAAGTTAATTCTGATTGGTCAATAAAG
ATGCCTGCAGCCAATAGCTTGGCAGAAGAGAGATAAGTAGAGTTGAGTTT
CCAAGGGCTTGGGTCAGAGGAGAAACAACAGATGAGAGAAAGAAAAAGTT
GCCCATAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_c23.g1 MSMg01no177_c23.g1 CHROMAT_FILE:
MSMg01no177_c23.g1 PHD_FILE: MSMg01no177_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:42 2005
         (532 letters)



>mm_chr19_32382474_32383404
          Length = 931

 Score =  998 bits (516), Expect = 0.0
 Identities = 528/532 (99%), Gaps = 1/532 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactcagctggagagaagagatcagattctcacttcctttctacctgagtcagttctcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactcagctggagagaagagatcagattctcacttcctttctacctgagtcagttctcag 260

                                                                       
Query: 61  agggctactgttctgaaggccagtggactcaacagtctgaggaaaggtttccttgttgat 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 agggctactgttctgaaggccagtggactcaaccgtctgaggaaaggtttccttgttgat 320

                                                                       
Query: 121 catctgtatttggtttggaaaggacactagcagtattcaaggtttacaaagtcaatactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catctgtatttggtttggaaaggacactagcagtattcaaggtttacaaagtcaatactg 380

                                                                       
Query: 181 gcactttttcctgacaggcagtcttcagatgacaactttacgtatgggtgagagtaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcactttttcctgacaggcagtcttcagatgacaactttacgtatgggtgagagtaaaag 440

                                                                       
Query: 241 acctgtgagcctcctcaaatagaccctgttcaaaacagcaatgattcactgcatacaggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acctgtgagcctcctcaaatagaccctgttcaaaacagcaatgattcactgcatacaggg 500

                                                                       
Query: 301 gccctggtgcgctagcttctgcagcttatttaaaatgcaaagtgctaaagaaaaaggcaa 360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 -ccctggtgcgctagcttctgcagcttatttaaaatgcaaagtgctaaagaaaaaggcaa 559

                                                                       
Query: 361 atttctggggctcagaaagtgtgactcagtaagcagtacaggtgggtgttgaggtttttt 420
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 560 atttctggggctcagaaagtgtgactcagtaagcagtagaggtgggtgttgaggtttttt 619

                                                                       
Query: 421 gtttttaactgtctattgtaatgctaagtgcggcccccaaaacctggagtttgtacatag 480
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtctttaactgtctattgtaatgctaagtgcggcccccaaaacctggagtttgtacatag 679

                                                               
Query: 481 ctcctgggaccctgctaccaagttaattctgattggtcaataaagatgcctg 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctcctgggaccctgctaccaagttaattctgattggtcaataaagatgcctg 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 931
Length adjustment: 10
Effective length of query: 522
Effective length of database: 921
Effective search space:   480762
Effective search space used:   480762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)