BAC Information

Click to search

BAC

Clone NameMSMg01-178F02
Chromosome19 (Build37)
Map Location 43,483,926 - 43,484,518
singlet/doubletsinglet
Overlap genenone
Upstream geneCrtac1, D19Ertd386e, Loxl4, 4833409A17Rik, Hps1, LOC545291, EG627624
Downstream geneCnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178F02.T7 (MSMg01no178_f02.b1)MSMg01-178F02.TJ (MSMg01no178_f02.g1)
ACCAG372436AG372437
length729740
length of high quality
(start - end)
598 (46 - 643)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no178_f02.b1 PHD_FILE: MSMg01no178_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:05 2005CHROMAT_FILE: MSMg01no178_f02.g1 PHD_FILE: MSMg01no178_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGGGGTATACTTTGTTATTGAGCGACATCGATATTATCTGACTT
TTTTTGTTGTATTTTAAATGTACATTTATTTTATGAGCCAGTAAATATAT
GTAATTAAACTAAAATGGGTATATTTGATTTGTTAAAATATGGTATAACG
TTTGGAACTACTCTTATATCTTAGAGTTCTTCCAGCTATTGATGGCTCAT
TTTTTATAGCTTATTTTTTTCAGCTAAGAAGACTTATGAACATTTTCACT
TGGTCGTGTTTGTTGTAGTTTCTATTCCCAGAAGGTTTCTAGCTAATCAT
TGTTCTTGATGTGGACTGTCAGGGTAGGAGATGATTTTGCAAGAATAAAA
TCTGCTGTTACGCTGCATGGACAATTTATTTAGATTCTCTCCAACTAACA
AATAATGCTTGGTGAATACTTAATGCAGAACTATTTCTGTAGAATGAGAA
TTGGTAAAAAATAAATGAATATTTAGTGCCTCTGATATATATTGATAATT
CATCTTCTACAGGTATTATATCAATTTATAGAACTGCTATATAAATAGAT
GAGAGCCAAGTGGTAGCGGCACATGCCTTTAATCCCGGCACCCAGGAGGC
AGAGTCAGGAGGAGCTCTATAAGCTTGAGGCTAGCCTGGTCTACAGAGTG
AAGTCCAGGACAAGCAGGGCTATACTGAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGCTCACCATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAG
ATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATC
CAGCAATACCTCTTTTGTTTATATATCCCCAACATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTACAAAGAATGAA
TTTATGAAATTTCCTGGTCCAATGGATGGACCTGCAGGGCACCATCCCGA
GTGAGGCACCCCATTTCCTAAGGAACCCCCCTTTCAGGTACTCCCTGATT
ATTGGACTTTATCCTTCCATTCTTTATTATCTAGCCCTCGCCACTCCATT
TTCCTAAAACCATGAAACTTCCACAAAAATGATTTCTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_f02.b1 MSMg01no178_f02.b1 CHROMAT_FILE:
MSMg01no178_f02.b1 PHD_FILE: MSMg01no178_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:05 2005
         (598 letters)



>mm_chr19_43483762_43484758
          Length = 997

 Score = 1096 bits (567), Expect = 0.0
 Identities = 588/595 (98%), Gaps = 3/595 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaggggtatactttgttattgagcgacatcgatattatctgacttttttt-gtt 63
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 757 gaattctagggg-atactttgttattgagcgacatcgatattatctgactttttttgggt 699

                                                                       
Query: 64  gtattttaaatgtacatttattttatgagccagtaaatatatgtaattaaactaaaatgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gtattttaaatgtacatttattttatgagccagtaaatatatgtaattaaactaaaatgg 639

                                                                       
Query: 124 gtatatttgatttgttaaaatatggtataacgtttggaactactcttatatcttagagtt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gtatatttgatttgttaaaatatggtataacgtttggaactactcttatatcttagagtt 579

                                                                       
Query: 184 cttccagctattgatggctcattttttatagcttatttttttcagctaagaagacttatg 243
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 578 cttccagctattgatggctcattttttatagctta-ttttttcagctaagaagacttatg 520

                                                                       
Query: 244 aacattttcacttggtcgtgtttgttgtagtttctattcccagaaggtttctagctaatc 303
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 519 aacattttcacttggtcgtgtttgttgtagattctattcccagaaggtttctagctaatc 460

                                                                       
Query: 304 attgttcttgatgtggactgtcagggtaggagatgattttgcaagaataaaatctgctgt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 attgttcttgatgtggactgtcagggtaggagatgattttgcaagaataaaatctgctgt 400

                                                                       
Query: 364 tacgctgcatggacaatttatttagattctctccaactaacaaataatgcttggtgaata 423
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tacgctgtatggacaatttatttagattctctccaactaacaaataatgcttggtgaata 340

                                                                       
Query: 424 cttaatgcagaactatttctgtagaatgagaattggtaaaaaataaatgaatatttagtg 483
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 339 cttaatgcagaactatttctgtagaatgagaattggtaaaaaataaatgaatgtttagtg 280

                                                                       
Query: 484 cctctgatatatattgataattcatcttctacaggtattatatcaatttatagaactgct 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 cctctgatatatattgataattcatcttctacaggtattatatcaatttatagaactgct 220

                                                                  
Query: 544 atataaatagatgagagccaagtggtagcggcacatgcctttaatcccggcaccc 598
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 atataaatagatgagagccaagtggtagcggcacatgcctttaatcccggcaccc 165


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 997
Length adjustment: 10
Effective length of query: 588
Effective length of database: 987
Effective search space:   580356
Effective search space used:   580356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)