BAC Information

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BAC

Clone NameMSMg01-178G15
Chromosome19 (Build37)
Map Location 28,142,273 - 28,142,456
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868, LOC100042612, Rfx3, LOC666997, LOC433235
Downstream geneGlis3, EG434460, EG627788, Slc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178G15.T7 (MSMg01no178_g15.b1)MSMg01-178G15.TJ (MSMg01no178_g15.g1)
ACCAG372506AG372507
length836717
length of high quality
(start - end)
---282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no178_g15.b1 PHD_FILE: MSMg01no178_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:13 2005CHROMAT_FILE: MSMg01no178_g15.g1 PHD_FILE: MSMg01no178_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTXXXXXXXXXXXXXXXXXXXXXXXXXXAATCACAAGAACCGCGGAATT
CACTTTGTGCCCTGCTCCCATCCATACATGTGCTGATGGCTTCATGGGAT
CTGTTCAGATATCTAGTTACTTGGTTTTCTTTTGTGGATTATGTATTGGT
TATGATGCTGTCCTGTGCAAAATTAGAATCCGAACACAAATCCACACAAA
AAACAAGCCACAAGCATAAAGAGGAAAAACTGCCAAGCATAACGAATGAT
CCAATACACACTAAAAGCCTTACGCTCACTGCCCAAAATACAAACAAAAA
AACTGAACCGCCACTTTTATTAAAGAAACGACCAACGCCAAACAAAAAAA
AAAAAAAAAAACAACCCCCCCCTCCCCGCTTACTCAAAACACAGAAAACG
AAAAAAATAGAATTTTCACCCACCCCCAAAAAGGGAAATAAAAAAAACAC
AAAAATAAGAAACACACCTACAATAAAAACAAAATACCACAAAAAAAAAC
ACCAAAAAACGTAAACCAATAAAAAAACTACACAATCCATTTAAAAACAA
AAACACAAACAAAAAAAAACAAACAAACACCAAAAGACAAATAAAAATCA
AAAAAAATACAAAAATCCTACAAAACTAAGGAACAAATAAATCACTAAAC
AAATAAACATAAAACAAAAAAAAAAAACCACTATTAAACAACAAACAAAT
ACAAAAATAAAAAACACACAAAAACCAAATAAACCAAAACAAAATAGATA
AAAAAATTTCACCAACAAACCCAACAAACAATAATAATAAACCTTAATAA
TTTCATAAACACAAAAATCAATCTCCCAACCCACAG
CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTATCACAAACAAGTATATCTG
AGGATGTTGTAGATCTGCATTCACACAGCCTGCCTCCATGGGCGGCCAAC
ATGTTATTCAGCATGGTGTAGCGACTCCTTCATATTGTTGTGTGCCTTAC
TTTTCATGGTTTTGAGTCATATTTGATTGAATAAATACACCACCATTAAA
ACAACCTTTTAAAAATGCATTTATCAAGCCGGACATGGAGGCGCTAGCCT
TTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAATTCGAGG
CCAGCCTGTTCTCCAAAGTGACCTCCACGATAGCCAGGGCTACACAGAGA
AACCCTGTCTCGAAACCCCCATAAAAAAATAAAAAAATANAAAATGTATT
TATCAGTTGACAAATATTTGCATATTATGAACAACTCCGATATGAATCTT
CTTGCCTGCATTTCGTGCCCATATGTTCTTATAACTTTTGAGTAAATATG
AAAAACAATGACCCATCCCATGATGCCACTATATAATTAATTATTTAAAA
CTGCCAAAGTCATTTGAAAAGCGGTTGAACATTTTTATACTTTTACCAAC
AACTTGTGAGAGTCCATTGTTAACCCATATTCTCTGCACCACTTGTTATA
CCGCATTCTTTTACCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_g15.g1 MSMg01no178_g15.g1 CHROMAT_FILE:
MSMg01no178_g15.g1 PHD_FILE: MSMg01no178_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:13 2005
         (282 letters)



>mm_chr19_28142073_28142754
          Length = 682

 Score =  356 bits (184), Expect = e-103
 Identities = 184/184 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttatcacaaacaagtatatctgaggatgttgtagatctgcattcacacagcctgcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttatcacaaacaagtatatctgaggatgttgtagatctgcattcacacagcctgcctc 260

                                                                       
Query: 61  catgggcggccaacatgttattcagcatggtgtagcgactccttcatattgttgtgtgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgggcggccaacatgttattcagcatggtgtagcgactccttcatattgttgtgtgcc 320

                                                                       
Query: 121 ttacttttcatggttttgagtcatatttgattgaataaatacaccaccattaaaacaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttacttttcatggttttgagtcatatttgattgaataaatacaccaccattaaaacaacc 380

               
Query: 181 tttt 184
           ||||
Sbjct: 381 tttt 384



 Score =  186 bits (96), Expect = 1e-51
 Identities = 108/112 (96%), Gaps = 1/112 (0%)
 Strand = Plus / Plus

                                                                       
Query: 171 taaaacaaccttttaaaaatgcatttatcaagccggacatggaggcgctagcctttaatc 230
           |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 551 taaaacaaccttttaaaaatgcatttatcaagccggacttggaggagctagcctttaatc 610

                                                               
Query: 231 ccagcacttgggaggcagaggcaggtggatttctgaattcgaggccagcctg 282
           |||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 611 ccagcacttgggaggcagag-caggtggatttctgaattcaaggccagcctg 661


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)