Query= MSMg01no179_b14.b1 MSMg01no179_b14.b1 CHROMAT_FILE:
MSMg01no179_b14.b1 PHD_FILE: MSMg01no179_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:01 2005
(246 letters)
>mm_chr19_32824415_32825060
Length = 646
Score = 371 bits (192), Expect = e-107
Identities = 228/244 (93%), Gaps = 8/244 (3%)
Strand = Plus / Plus
Query: 3 ctcgaactcagaaatccgcctgcctgcctctgcctccagagtgctgcccttaaaggcgtg 62
||||||||||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct: 211 ctcgaactcagaaatccgcctgcct----ctgcctcccgagtgctgggattaaaggcgtg 266
Query: 63 cgccaccgctgccctgctctagcatgtttgattcttaagggcctcatccttaaaagtaac 122
||||||| |||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cgccaccactgcccggc----gcatgtttgattcttaagggcctcatccttaaaagtaac 322
Query: 123 ttcaggcttaacttgttagataacacacatcacatctcaccccatgttctgtgtcctcta 182
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 323 ttcaggcttaacttgttagataacacacgtcacatctcaccccatgttctgtgtcctcta 382
Query: 183 ggactggaatgccatgacaagccatcgctaattaaatttccccatgttaacctgctcagg 242
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggactggaatgccatgaaaagccatcgctaattaaatttccccatgttaacctgctcagg 442
Query: 243 ttta 246
||||
Sbjct: 443 ttta 446
Score = 136 bits (70), Expect = 2e-36
Identities = 88/94 (93%)
Strand = Plus / Plus
Query: 5 cgaactcagaaatccgcctgcctgcctctgcctccagagtgctgcccttaaaggcgtgcg 64
||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 1 cgaactctgaaatccgcctgcctgcctctgcctcccgagtgctggggttaaaggcgtgcg 60
Query: 65 ccaccgctgccctgctctagcatgtttgattctt 98
||||| ||||||||||||||||||||||||||||
Sbjct: 61 ccaccactgccctgctctagcatgtttgattctt 94
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no179_b14.g1 MSMg01no179_b14.g1 CHROMAT_FILE:
MSMg01no179_b14.g1 PHD_FILE: MSMg01no179_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:01 2005
(657 letters)
>mm_chr19_32982045_32983101
Length = 1057
Score = 1224 bits (633), Expect = 0.0
Identities = 651/657 (99%)
Strand = Plus / Minus
Query: 1 catttcaaccaagatgccaccagaatcgtccacataacatgaaatgagctcatctttcct 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 catttcaaccaagaggccaccagaatcgtccacataacatgaaatgagctcatctttcct 798
Query: 61 ctgggcttgctttgctagagtatgagctatagatcccgccttattaagtcatttcaaggt 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 797 ctgggcttgctttgctagagtatgagctatagatcctgccttattaagtcatttcaaggt 738
Query: 121 tacgagagtgaatatattttgttcccagttgtggatgtcatgtaaggaatgtcctctata 180
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tatgagagtaaatatattttgttcccagttgtggatgtcatgtaaggaatgtcctctata 678
Query: 181 tctggatattccccctatctgggcaaagcacgggaaccaaacccataattgctgcaacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tctggatattccccctatctgggcaaagcacgggaaccaaacccataattgctgcaacaa 618
Query: 241 ataccacaaaaactccaaagatgttttaaagctcttgaagtaaggcgtgaagtatggaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ataccacaaaaactccaaagatgttttaaagctcttgaagtaaggcgtgaagtatggaga 558
Query: 301 aattcagctcctgatagaagtatttccttaagctccatgacaggcaaccctctttgctgg 360
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 557 aattcagctcctgatagaagtatttccttaagctccatgacagggaagcctctttgctgg 498
Query: 361 gactcaaaggtctgaagatgagcaactgataaactcaccctacggaaggctcatggtcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gactcaaaggtctgaagatgagcaactgataaactcaccctacggaaggctcatggtcaa 438
Query: 421 ggctagcatgagtcaaggtatattgatggtttgaaaatcctcaaaaaactattgaaagac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ggctagcatgagtcaaggtatattgatggtttgaaaatcctcaaaaaactattgaaagac 378
Query: 481 cttgacgcacccagatgaagtgctgtgttctacgcctgtccattccctaacctcttccca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cttgacgcacccagatgaagtgctgtgttctacgcctgtccattccctaacctcttccca 318
Query: 541 cacccagactttctgaaaactcaacacagttaattcattgaattgattctttttaataag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cacccagactttctgaaaactcaacacagttaattcattgaattgattctttttaataag 258
Query: 601 ctggttgactttaagtgccctaggttttcccaacttccttgctctacacgaactatt 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ctggttgactttaagtgccctaggttttcccaacttccttgctctacacgaactatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
