BAC Information

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BAC

Clone NameMSMg01-179C05
Chromosome19 (Build37)
Map Location 6,289,191 - 6,289,499
singlet/doubletsinglet
Overlap geneEhd1
Upstream geneSf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2, LOC622554, Gpha2, Ppp2r5b, 1810013C15Rik
Downstream geneCdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2, Slc22a12, LOC629372, Rps6ka4, Ccdc88, Prdx5, 0610038D11Rik, Esrra, 1700019N12Rik, Kcnk4, Gpr137, Bad, Plcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1, D930010J01Rik, Flrt1, Otub1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179C05.T7 (MSMg01no179_c05.b1)MSMg01-179C05.TJ (MSMg01no179_c05.g1)
ACCAG373014AG373015
length778803
length of high quality
(start - end)		313 (45 - 357)147 (76 - 222)
definitionCHROMAT_FILE: MSMg01no179_c05.b1 PHD_FILE: MSMg01no179_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:04 2005CHROMAT_FILE: MSMg01no179_c05.g1 PHD_FILE: MSMg01no179_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTATGTATACCACGGCTGGCCTTGAGCACAGAGGTCCTCCAGCCT
CTGTCTCCTGAGTCCTGGGATTAAAGGCCTGTGGCCACACACAGGGCTGA
TATTCTGCCTTTAAAAACAAAACTGCAAACATAAGAAAGACGTGGTGGCG
CACACCCTACAGTTCTAGCACTTAGTCCACGGCAAGCTGATGCCATCCAG
AGATGATCCTGTCATAAAAAATGAAAACTCGGGGTTGGAGAGATGGCTCA
GCAGTGGAGAGGACCAGCTGTTCTCCCTAAAGATCCAGGTTCCTTTCCCA
GCACCCACATGGCATTCGTAACCCCATGTCCAATAGGTCCAATACCTTCT
TCTGTTCCCCATGGTTACCCCCCCCGTTACTGATTCTTGCTTACCGGCAA
TACATACATTTTATACTACCTTTGTAACCTTAATATCCCCTGGTTCTTTG
TCCGTTGCTCTTTTCTTACCCCTACCACCTGCTTACCCACAGGAATGCTG
CATTTATACATTTTATATTTTACCTTTGCCCCCCCTAACCCCCGCCCCTT
ACCCCCCCTTTTTTCCTTACCACTTTTCCCCCCTATCCTTCCTTTCCCCC
TTTTTTTCCCTTTTTTATTTTTTTTCTCCCTTTTTCCCCCCTATCTTACC
ACTTATTCCACAACTTATATTTTACTGTGTTTTCCTCTCTAATACCTCAA
CTTGTAACCAACTTATTTTTACACATTC

CCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTTACTGGAAAGGGGAACATGTGC
CTTGACCAGACCATCCACCCAAGTGACCTTCCGCAAAGGGAGAACTGAGG
CTGGGTAAAGCTGGGTGGGGAGAGATGGAGATGTCCCACTACAGAGTGGG
AGAGAGCAGTGTGGGGTGAGGGTAGCTGAAGAAGGCTGGTGAGTTGAAGG
CTTTTGCCCTACTGAGTCCGTCACAATGTCCCTTTGCTGGATACTTTTCC
ACAGTACGTTGATTTCCCCCTATTTTTTTTTTTTTCTGCGCGTCCCCGTC
AGTTTTTTATTATTGTTCCCTCCGCCCGCTATGCTGTTGTTATTACCCTT
TTTTTTTTTTTACCCGTGTGGCCCCACCCCCCTCCCTTTTCTTTCCTCCA
TCCCCCCCCTTTCTTCTCCTTTCTCCTTCTTTTCTTTTCTCCCCTCTCCC
CTCCCCCCCCCCCCTCCCTTGTCCTCTTCCTCTTTATTTTTCGTGTCCCC
CCTCCTCCTCTTTTTCTTCCGCCTCTTTTCTTCCTTCTTTTCTGTTGCTC
TCTTCTGGCCTCTATTTCGTTTTGCCCCTTTATTCCGTTTTTTCTCCTTT
CTTCCCCCTCCCCTCCGCCCCTTTTTGTTCTCTCTTTCCTTATGCTACCT
TCTTCTTTGTTTTTCCCCCCCCCGCCTCTATCCTCTCATTTTTTTTTTCC
CCCCCCTTTTCCCTTTCACCATTCCTCCCTCTCCCCTTTTCTTCTTTTTT
CCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_c05.b1 MSMg01no179_c05.b1 CHROMAT_FILE:
MSMg01no179_c05.b1 PHD_FILE: MSMg01no179_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:04 2005
         (313 letters)



>mm_chr19_6288964_6289676
          Length = 713

 Score =  561 bits (290), Expect = e-164
 Identities = 305/310 (98%), Gaps = 1/310 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactatgtataccacggctggccttgagcacagaggtcctccagcctctgtctc 63
           ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ggaattcactatgtagacca-ggctggccttgagcacagaggtcctccagcctctgtctc 478

                                                                       
Query: 64  ctgagtcctgggattaaaggcctgtggccacacacagggctgatattctgcctttaaaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ctgagtcctgggattaaaggcctgtggccacacacagggctgatattctgcctttaaaaa 418

                                                                       
Query: 124 caaaactgcaaacataagaaagacgtggtggcgcacaccctacagttctagcacttagtc 183
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 caaaactgcaaacataagacagacgtggtggcgcacaccctacagttctagcacttagtc 358

                                                                       
Query: 184 cacggcaagctgatgccatccagagatgatcctgtcataaaaaatgaaaactcggggttg 243
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 357 cacggcaagctgatgccatccagagacgatcctgtcataaaaaatgaaaactcggggttg 298

                                                                       
Query: 244 gagagatggctcagcagtggagaggaccagctgttctccctaaagatccaggttcctttc 303
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 297 gagagatggctcagcagtggagaggaccagctgttctcccaaaagatccaggttcctttc 238

                     
Query: 304 ccagcaccca 313
           ||||||||||
Sbjct: 237 ccagcaccca 228


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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