Query= MSMg01no179_o17.b1 MSMg01no179_o17.b1 CHROMAT_FILE:
MSMg01no179_o17.b1 PHD_FILE: MSMg01no179_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:02 2005
(326 letters)
>mm_chr19_5032872_5033597
Length = 726
Score = 574 bits (297), Expect = e-168
Identities = 316/323 (97%), Gaps = 4/323 (1%)
Strand = Plus / Minus
Query: 5 gaattctctgaagaa-actcagcaggccttggggcccagtcccaccagcctcgtcagaag 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gaattctctgaagaagactcagcaggccttggggcccagtcccaccagcctcgtcagaag 466
Query: 64 gtcttggcctttacttgaggtctgccttgtagcttacttatttctccttccagcgtcata 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gtcttggcctttacttgaggtctgccttgtagcttacttatttctccttccagcgtcata 406
Query: 124 gcttaccttaccctcctggtgccctgtgctggctcagcctctggaccatgatgtgctcct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gcttaccttaccctcctggtgccctgtgctggctcagcctctggaccatgatgtgctcct 346
Query: 184 tgaatgttcacggtacacaggtggcacacgtgtgcggagatggagaccacttctccatca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tgaatgttcacggtacacaggtggcacacgtgtgcggagatggagaccacttctccatca 286
Query: 244 gggaccctggctgggctgctgaagacctgctcagacccaactgcctctctgagttgtttg 303
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 285 gggaccctggctgggctgcagaagacctgctcagacccgactgcctctctgagttgttt- 227
Query: 304 gtttt-tttgtttttgttttttt 325
|||| ||| |||||||||||||
Sbjct: 226 -ttttgtttttttttgttttttt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space: 227289
Effective search space used: 227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no179_o17.g1 MSMg01no179_o17.g1 CHROMAT_FILE:
MSMg01no179_o17.g1 PHD_FILE: MSMg01no179_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:03 2005
(570 letters)
>mm_chr19_5007182_5008156
Length = 975
Score = 1056 bits (546), Expect = 0.0
Identities = 566/575 (98%), Gaps = 5/575 (0%)
Strand = Plus / Plus
Query: 1 ttaataggctttacaagtgccatccacagtag----aaaaaaaactgaatccacagaact 56
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 ttaataggctttacaagtgccatccacagtagaaaaaaaaaaaactgaatccacagaact 260
Query: 57 taatcattagcaattggacctcactgcatgcagcttgaaactatccacgcaccttgtcct 116
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatcattagcaactggacctcactgcatgcagcttgaaactatccacgcaccttgtcct 320
Query: 117 tagttgcaaacaacagaaaaccactctaaagtagctttaaa-aaaattaaatgggggaaa 175
|||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||
Sbjct: 321 tagttgcaaacaacagaaaaccaccctaaagtggctttaaagaaaattaaatgggggaaa 380
Query: 176 acagttacttggctgatgcatgtctgtatacatatatttgtgtgcactgtctgttcatat 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagttacttggctgatgcatgtctgtatacatatatttgtgtgcactgtctgttcatat 440
Query: 236 gggaaagccagaggctggcacctgtgttctcccctgctgctgtttgctttgttttgtggg 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggaaagccagaggctggcacctgtgttctcccctgctgctgtttgctttgttttgtggg 500
Query: 296 tgaggagatgcagagttttgcttgcatacatctctctgccatgcccgcagaggccaatgg 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaggagatgcagagttttgcttgcatacatctctctgccatgcccgcagaggccaatgg 560
Query: 356 agggcatcagatcccctggaattggagttacagacagttgtgaactaccatgtagatgct 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agggcatcagatcccctggaattggagttacagacagttgtgaactaccatgtagatgct 620
Query: 416 gggaatagaacataggtctctggaagagggggaggggttccatctctccagccttacttt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggaatagaacataggtctctggaagagggggaggggttccatctctccagccttacttt 680
Query: 476 tgacccaaggnttctcactgagcctggagttcacagttggggctgaatgggctggtcaga 535
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgacccaaggtttctcactgagcctggagttcacagttggggctgaatgggctggtcaga 740
Query: 536 aggtctccaggacccttgtatccctggctacccag 570
|||||||||||||||||||||||||||||||||||
Sbjct: 741 aggtctccaggacccttgtatccctggctacccag 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 975
Length adjustment: 10
Effective length of query: 560
Effective length of database: 965
Effective search space: 540400
Effective search space used: 540400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
