Query= MSMg01no180_a02.b1 MSMg01no180_a02.b1 CHROMAT_FILE:
MSMg01no180_a02.b1 PHD_FILE: MSMg01no180_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:09 2005
(390 letters)
>mm_chr19_17798617_17799406
Length = 790
Score = 681 bits (352), Expect = 0.0
Identities = 376/384 (97%), Gaps = 2/384 (0%)
Strand = Plus / Minus
Query: 6 aattcacacaggcacacatacttacacataaattttttaagtatgtaaatatttttaaat 65
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aattcacacaggcacagatacttacacataaattttttaagtatgtaaatatttttaaat 493
Query: 66 agtaatattgtac-ttgcttatattagcctatttccagagcttctgaataatgatttttt 124
|||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 agtaatattg-acattggttatattagcctatttccagagcttctgaataatgatttttt 434
Query: 125 gcagatttcctgcagaaattaatatatatgaagtaatagcatgtttgagatcatgcagat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gcagatttcctgcagaaattaatatatatgaagtaatagcatgtttgagatcatgcagat 374
Query: 185 ccacagaccttcagaatattcagaaaattgagtgtttatacatctagaacatttagagaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ccacagaccttcagaatattcagaaaattgagtgtttatacatctagaacatttagagaa 314
Query: 245 tggaacttttctaaacagcctggaaacacattgtcttcattactagtctactgatgtgaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tggaacttttctaaacagcctggaaacacattgtcttcattactagtctactgatgtgaa 254
Query: 305 aagacaccatggccaagacaaagcttagaaaagaaagcccttaatgaaggccttaatgag 364
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 253 aagacaccatggccaagacaactcttagaaaagaaagtccttaatgaaggccttaatgag 194
Query: 365 agaggagaggcagagggggagggg 388
|||||||||| |||||||||||||
Sbjct: 193 agaggagagggagagggggagggg 170
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space: 297561
Effective search space used: 297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no180_a02.g1 MSMg01no180_a02.g1 CHROMAT_FILE:
MSMg01no180_a02.g1 PHD_FILE: MSMg01no180_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:09 2005
(248 letters)
>mm_chr19_17654394_17655041
Length = 648
Score = 476 bits (246), Expect = e-139
Identities = 246/246 (100%)
Strand = Plus / Plus
Query: 1 agtgtgacaagaggattccacaccctcaaactgattacccgctttgcatcaggactctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgtgacaagaggattccacaccctcaaactgattacccgctttgcatcaggactctca 260
Query: 61 gaacaaaattctgcccaaagaaacaatttgagatctatgctgcgatgactgttcttggtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaacaaaattctgcccaaagaaacaatttgagatctatgctgcgatgactgttcttggtt 320
Query: 121 atcattgactacatctgcaatgaactaaaacccatgtggctgggcacacctgtgagggat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcattgactacatctgcaatgaactaaaacccatgtggctgggcacacctgtgagggat 380
Query: 181 tgttttcttaatacaatcatttgaagtaggaagacccatttcagtttggatcttctgagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttttcttaatacaatcatttgaagtaggaagacccatttcagtttggatcttctgagg 440
Query: 241 ctggag 246
||||||
Sbjct: 441 ctggag 446
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space: 152721
Effective search space used: 152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
