XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATT
GGTATATCTGGTTTGTTCAGACTTATTTGGTGTCATACTAAACTATGGCA
CTTTATTTATCAGAGCAACAGAAATCTTCTAAACTATGGGCCTAATTTTT
TTTATTTTGTACTTAAGGTGGAACTTGGGGCTGTTTTTCATGAGCTCTTC
AAGCACTCAACCCATTTTGTTGTCTGTGAAAGTCTGATGGCTTACTGTCC
ACTAATTTGTATACCAACACCGATCTACTTTCCCCAGTCCATTTGTTCTA
ACATTACTCTCTTGAGAGTCAGCAATTTCATTGGGTAAAGATTTTCTCCC
AATGATAACTGACTAGGACCTTTAAATTTGCTTTTATCTTGAAATCCTCC
CTTCTGGATATTCTCCTCACACCTTAATTTTTTCTCCACAAACTAGAATT
ATAATTTCTTTGCTCACCTTTGTTTTCCCTAAAGAGTGGCGTCTGTTTAT
TATTAAAGCATGATAGATTGCCTTTATTCATGCAGTGGTGTTTTGAAATG
ATGCTTCTTATGTTCACAGGGAAATACAGGAGAGATTCCTGGCAAAAGAA
GTCTCTTTTAATTCTCAAGCCAAGAAGTGTCACTCTCATGAACTTTCCTC
TCATTTGCTAACGGAATGGTTACTCATTGTGCTTTCTTTTTAGAAGCAGT
GATTTTCAATAGTATTGAAAGTTAATAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTCCCAATAGTGAAGAGAAACACGTGTGAAC
ATATTTGTTCCCTTGCCTGATTTTCAAGTATTCATGGATGGGATTGGTCA
AGTACTGTAAGAGTACAGATAGGCATCAGCTTGTTGCTGGCCTTTGAGGC
AATCATACAGTTCAAAGTGAAGCAAAGATTAACTGCCTGCCAGTAGGCAA
TGTGTCAAGTGTATTTACTGAATTTAAATTATTTTATTGTCAAAAAAGAC
CTTATAATCTTATTATTTTAACACATATGGAAACAACACATCAGCACTAG
CTACAAGAATTCTGTGGTAGATGTATTAGGTGGGCCTGGGCACAACAGGA
TTTCTCTATGTAACAATTAAAGAGGGACCATGAGTTTGAAAGAGAGTAAG
GGGAGTTGGATGAAGAAAGGACAGTTTGGAAATGATGTAATTATATTACT
ATTTCAAATACTAGTTAGGTAAGAAAAGAAATCATAGCTCAATGCATTTG
CTTTAGATGCCTGAGTTACAATAGGGATGTTGCTGTCTTTATTCAACCCC
ACCCTCTCTGCTCGAGTCATTGGTGCCATCCCTTCATAATGACACCATCT
AAGGACACATGCAATGGTAGACTCCAAGAGCATTCTGAACTAGCTTCCAG
AGTAGCATTTTACTGGATTATCTTATCAC

Query= MSMg01no180_p04.b1 MSMg01no180_p04.b1 CHROMAT_FILE:
MSMg01no180_p04.b1 PHD_FILE: MSMg01no180_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:18 2005
         (691 letters)



>mm_chr19_52423386_52424476
          Length = 1091

 Score = 1313 bits (679), Expect = 0.0
 Identities = 685/687 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcattggtatatctggtttgttcagacttatttggtgtcatactaaactatggca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 ggaattcattggtatatctggtttgttcagacttatttggtgtcatactaaactatggca 831

                                                                       
Query: 64  ctttatttatcagagcaacagaaatcttctaaactatgggcctaattttttttattttgt 123
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 830 ctttatttatcagagcaacagaaatcttctcaactatgggcctaattttttttattttgt 771

                                                                       
Query: 124 acttaaggtggaacttggggctgtttttcatgagctcttcaagcactcaacccattttgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 acttaaggtggaacttggggctgtttttcatgagctcttcaagcactcaacccattttgt 711

                                                                       
Query: 184 tgtctgtgaaagtctgatggcttactgtccactaatttgtataccaacaccgatctactt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tgtctgtgaaagtctgatggcttactgtccactaatttgtataccaacaccgatctactt 651

                                                                       
Query: 244 tccccagtccatttgttctaacattactctcttgagagtcagcaatttcattgggtaaag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tccccagtccatttgttctaacattactctcttgagagtcagcaatttcattgggtaaag 591

                                                                       
Query: 304 attttctcccaatgataactgactaggacctttaaatttgcttttatcttgaaatcctcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 attttctcccaatgataactgactaggacctttaaatttgcttttatcttgaaatcctcc 531

                                                                       
Query: 364 cttctggatattctcctcacaccttaattttttctccacaaactagaattataatttctt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 cttctggatattctcctcacaccttaattttttctccacaaactagaattataatttctt 471

                                                                       
Query: 424 tgctcacctttgttttccctaaagagtggcgtctgtttattattaaagcatgatagattg 483
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 470 tgctcacctttgttttccctaaagagtggtgtctgtttattattaaagcatgatagattg 411

                                                                       
Query: 484 cctttattcatgcagtggtgttttgaaatgatgcttcttatgttcacagggaaatacagg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 cctttattcatgcagtggtgttttgaaatgatgcttcttatgttcacagggaaatacagg 351

                                                                       
Query: 544 agagattcctggcaaaagaagtctcttttaattctcaagccaagaagtgtcactctcatg 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 agagattcctggcaaaagaagtctcttttaattctcaagccaagaagtgtcactctcatg 291

                                                                       
Query: 604 aactttcctctcatttgctaacggaatggttactcattgtgctttctttttagaagcagt 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aactttcctctcatttgctaacggaatggttactcattgtgctttctttttagaagcagt 231

                                      
Query: 664 gattttcaatagtattgaaagttaata 690
           |||||||||||||||||||||||||||
Sbjct: 230 gattttcaatagtattgaaagttaata 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space:   736161
Effective search space used:   736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no180_p04.g1 MSMg01no180_p04.g1 CHROMAT_FILE:
MSMg01no180_p04.g1 PHD_FILE: MSMg01no180_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:19 2005
         (661 letters)



>mm_chr19_52362849_52363909
          Length = 1061

 Score = 1129 bits (584), Expect = 0.0
 Identities = 638/656 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcccaatagtgaagagaaacacgtgtgaacatatttgttcccttgcctgattttcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcccaatagtgaagagaaacacgtgtgaacatatttgttcccttgcctgattttcaag 260

                                                                       
Query: 61  tattcatggatgggattggtcaagtactgtaagagtacagataggcatcagcttgttgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattcatggatgggattggtcaagtactgtaagagtacagataggcatcagcttgttgct 320

                                                                       
Query: 121 ggcctttgaggcaatcatacagttcaaagtgaagcaaagattaactgcctgccagtaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcctttgaggcaatcatacagttcaaagtgaagcaaagattaactgcctgccagtaggc 380

                                                                       
Query: 181 aatgtgtcaagtgtatttactgaatttaaattattttattgtcaaaaaagaccttataat 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgtgtcaagtgcatttactgaatttaaattattttattgtcaaaaaagaccttataat 440

                                                                       
Query: 241 cttattattttaacacatatggaaacaacacatcagcactagctacaagaattctgtggt 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 cttattattttaacacatatggaaacgacacatcagcactagctacaagaattctgtggt 500

                                                                       
Query: 301 agatgtattaggtgggcctgggcacaacaggatttctctatgtaacaattaaagagggac 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 agatgtattaggtgggcctgggcacaataggatttctctatgtaacaattaaagagggac 560

                                                                       
Query: 361 catgagtttgaaagagagtaaggggagttggatgaagaaaggacagtttggaaatgatgt 420
           |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 561 catgagtttgaaagagagtaagaggagttggatgaagaaagaacagtttggaaatgatgt 620

                                                                       
Query: 421 aattatattactatttcaaatactagttaggtaagaaaagaaatcatagctcaatgcatt 480
           ||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 621 aattacattactattttaaatagtagttaggtaagaaaagaaatcatagctcaatgcatt 680

                                                                       
Query: 481 tgctttagatgcctgagttacaatagggatgttgctgtctttattcaaccccaccctctc 540
           |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 681 tgctttagatgccttagttacaatagggatgttgctgtctttatttaaccccaccctctc 740

                                                                       
Query: 541 tgctcgagtcattggtgccatcccttcataatgacaccatctaaggacacatgcaatggt 600
           || ||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||
Sbjct: 741 tgttcgagtcattggtgccatcccttcataatgacatcatctaaggacatgtgcaatggt 800

                                                                   
Query: 601 agactccaagagcattctgaactagcttccagagtagcattttactggattatctt 656
           |||||||||||||||||||||||||||||||| |||| |||||| ||| |||||||
Sbjct: 801 agactccaagagcattctgaactagcttccagggtagaattttattgggttatctt 856


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)