BAC Information

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BAC

Clone NameMSMg01-181L08
Chromosome19 (Build37)
Map Location 36,692,656 - 36,692,905
singlet/doubletsinglet
Overlap geneHectd2
Upstream geneA830019P07Rik, Htr7, Rpp30, Ankrd1, LOC668195, Pcgf5, LOC668201
Downstream geneLOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1, Cpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181L08.T7 (MSMg01no181_l08.b1)MSMg01-181L08.TJ (MSMg01no181_l08.g1)
ACCAG374806AG374807
length762735
length of high quality
(start - end)
250 (76 - 325)249 (71 - 319)
definitionCHROMAT_FILE: MSMg01no181_l08.b1 PHD_FILE: MSMg01no181_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:14 2005CHROMAT_FILE: MSMg01no181_l08.g1 PHD_FILE: MSMg01no181_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATAAAAACTGAAGAGAAGGCTCAGA
CAACAGTGTTATCTGGTAGAATGATCTGGAGGGAGCTGGTCAGAAGGATT
CAAGGACTGGATGTTCAGTGTGCATAGAGGACAACAGCTTTGAAAACAGG
CCCAAAATGACTTGGTACAACTTTCTGACAGTCGAGACTGAACTATAACA
ATATTCTATCTACTAGGTATTTTGCATAGATCACAGTCTTACACAGTTTA
ACATACCAGTGAGGAAATGGAGATTGTAAACACTGAGCAATTCGAAATCC
TATAGAAGAGAGGTATTCACTATTTACCTTCAGATTTGTCTGACTCCAAA
CCATATGCTTTTCTCCTCCCCTTTTTAACGATTATTGTCGCGTTGTTTTT
TTTTCCCCCCCCTTTTTTTTTCCGCTGTTATATATAATTTTCCTCGTCCC
TTCCCCCTCCTCCACCTTTCCTTATTCCCCATTTACCCCCCTTTTATTTT
CCCCCCCCCCCCTATTTTTTTTTCTCCCCTTTTTTTCCCCCCCCCCCCCC
CCCCCCTTCCACTTTTTTTTCTCCCCCCCACTCCCCCCCCCCTTTTTTTT
TTTTTTATTCCTTTTTCTTCCCCTCCCCTCTTTTCCCTTTTTTATTCCCC
CCCCCCCCCCCTCCCCCCCTCCTTCCCCAACATTTTTTATCTTTCCACTC
CCCCTTTATCAT
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGA
ATTCATGAAATTCGCAAGAAAATGGATGGATCTGGAGGATATCATCCTGA
GTGAGGTAACCCAATCACAAAACACCACACATGGTATGCACTCACTGATA
AGTGGATATTAGCTTAGAAGCTCAGAATATCCAAGATACAATTCACAAAC
TACATGAAACTCAAGATGAAGGAAGACCAAAGTGTGGATACTTCGGTCCC
CCCCCCCTTTTTTTTTTGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCT
GGAACTCACTCTGTAGACCAGGTTGTTCTTGAATTCAGAAATCTGCCTGC
CGCTGCCTCCTTTTTGCTGCCACCACCCACATGCACCACTACTGCTTGCA
AGCTCTGAATTTTTACGCACAAAAAAGATGTCTTGGGTTGATATACTTTA
GTTAAGAAGGACAGTTAGCAAGATGTGCTACAGAAGTCCCCCCCCTAAAA
AAGTCATAGCATATTTAGAGACTTTTCTAGAACTTTGGACTTTGATAGAC
TATGCCTTTGCTTTAGTAGTGGCAGGTAGCGCTATCAACACGTTGAGCTT
TAACACCTGCATAGAACTTTCTGTCTTGTAATTAGCTGTGTTTTATGTTA
GGTATCCCGTCCCCCCTTTTTTTATTTTTTTTTGTCCCCCCGATATTATA
TTATGTCTCCGCCCAAAAACCCCCCCCTACAGACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_l08.b1 MSMg01no181_l08.b1 CHROMAT_FILE:
MSMg01no181_l08.b1 PHD_FILE: MSMg01no181_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:14 2005
         (250 letters)



>mm_chr19_36692456_36693105
          Length = 650

 Score =  484 bits (250), Expect = e-141
 Identities = 250/250 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaaaactgaagagaaggctcagacaacagtgttatctggtagaatgatctggagggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataaaaactgaagagaaggctcagacaacagtgttatctggtagaatgatctggagggag 260

                                                                       
Query: 61  ctggtcagaaggattcaaggactggatgttcagtgtgcatagaggacaacagctttgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggtcagaaggattcaaggactggatgttcagtgtgcatagaggacaacagctttgaaa 320

                                                                       
Query: 121 acaggcccaaaatgacttggtacaactttctgacagtcgagactgaactataacaatatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaggcccaaaatgacttggtacaactttctgacagtcgagactgaactataacaatatt 380

                                                                       
Query: 181 ctatctactaggtattttgcatagatcacagtcttacacagtttaacataccagtgagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctatctactaggtattttgcatagatcacagtcttacacagtttaacataccagtgagga 440

                     
Query: 241 aatggagatt 250
           ||||||||||
Sbjct: 441 aatggagatt 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)