BAC Information

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BAC

Clone NameMSMg01-182J10
Chromosome19 (Build37)
Map Location 58,351,895 - 58,352,144
singlet/doubletsinglet
Overlap geneGfra1
Upstream geneAI450540, Trub1, LOC100043038, Atrnl1
Downstream geneLOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182J10.T7 (MSMg01no182_j10.b1)MSMg01-182J10.TJ (MSMg01no182_j10.g1)
ACCAG375425AG375426
length744789
length of high quality
(start - end)
250 (74 - 323)56 (19 - 74)
definitionCHROMAT_FILE: MSMg01no182_j10.b1 PHD_FILE: MSMg01no182_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:22 2005CHROMAT_FILE: MSMg01no182_j10.g1 PHD_FILE: MSMg01no182_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGAGAGGAATGAGGTAATGAGAACAGA
CTGTATTGAGCAGCCAGTGTCCCGAAGAACTCAGGGTAACTGCCATTAAC
CCTCTTAGGAGCCACAGTAAGATGGCTCCATGGCATTAGCCCTGCCTTCC
ATGTGAAGAAAAAAACCTGAGATTGGGAGAAGTCCAGCCACAGGCTAAGG
GATCAGAGAGGGGCCATGGAGCATAAAGTCATCTCTACAACAGAGAGCCT
TCTATCACTGCACTTCTTCGAAAGCTTCCACAGACCATGCGATCTGAACC
AAGTCCCAGACTTGTAAGGCCTAATGTTGAAAGCTTTCCAGAAAATTTCT
AGTCTTCCCCTGCCCACCCCCCCTATTTTCTTGTTTAGCCCAGGCTGCCC
TTCTTCCTCAGTATCCAGCTGATCATGATCTTCGATTCCCTAATCCTCTT
GCCTCCCTGTCCTATGAGCTGTTATTATATATACCCACTACCCCCTCCCA
TTTTATTTTTGTTACCTTTCCCGCTTTCCTTTCTTCGCGCCCCCTATCAC
TCCTTCTTCCTTACACCTTTGCTCGCCTTTCTTTTTTTCTCTCCCCCCCT
CCCTTCTTCCCTTTTTCTCTTCCTCTCCCCCGTTTATTTTTTTCCTTTTT
TTCCCCTCTCATTTATTTTTTTCCCCCTTCCTTCACCTTGTTCG
TTTGGGCGCTAACGACTCCTATAGGGAGAGGACCGCGGAATCCTTTAATC
ATGAATTTGAGAGAGTACATTCCAGTCCAATGGAGCGGATCAGCATCCCT
AACCAAAGTCCCCAGGGGCCCCTTAAACTTTGCAGCTTCATTAACCCCCC
TTCCCCACATTTTTTCAAGAAAACCTACAACTTCTTCCACCCCGCTCCTT
TATGGGCTTAAAAAAAAAACCCGGGGAAAAAAAACCCCCGTCCCCCCATG
GGGGGAAAATTTTTGGGCCCCCCCCACAATTTATAACGCGGGGTTTTTCC
AAAAAAATTAAAAACCACAAGGGCTCTTAAAAAGGGGGAAATTTTATCCC
CCCTTTTTTCCCCCGGGGGGGTTTAAAGGGGCCCCAAATAAAATATTTTT
TAATATTTACCCAAAAAATATTAAGGGATTCTCCTCTTTAAACCCCAAGA
GCCTCTCTCTTTTGGGGAGGTACATAACAACCCCTCTTTTTTTTTAAATA
ATATTTTTCTCCACAAAAAAAAAAAAAAAAATATCTTTTCTTTTTAATCC
CCGTCACAAAAAACAACCCCGATATTATTTTTTTTCATCTTTTCCGGCCC
CCCCCCCCCCCCCACCTCCCCCCCGCCGCTTGTGTGAAACTACTTTAATT
TTATAAATCCTCATTTTTATATTTACTCCTCTCTCCTTTAATTTTACCCC
CCCCCCCCCCCCCCACACCGAAATAAACAAAATAATCCAGCCCCAATTTT
ATTCCTCCTTGGTTTGGCAATGTAGACATAACATATCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_j10.b1 MSMg01no182_j10.b1 CHROMAT_FILE:
MSMg01no182_j10.b1 PHD_FILE: MSMg01no182_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:22 2005
         (250 letters)



>mm_chr19_58351695_58352344
          Length = 650

 Score =  431 bits (223), Expect = e-125
 Identities = 244/251 (97%), Gaps = 2/251 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagaggaatgaggtaatgagaacagactgtattgagcagccagtgtcccgaa-gaactc 59
           |||||||||||||||||||||||||||||||||||| |||||||||| | ||| ||| ||
Sbjct: 450 agagaggaatgaggtaatgagaacagactgtattgaacagccagtgt-cagaaggaattc 392

                                                                       
Query: 60  agggtaactgccattaaccctcttaggagccacagtaagatggctccatggcattagccc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 agggtaactgccattaaccctcttaggagccacagtaagatggctccatggcattagccc 332

                                                                       
Query: 120 tgccttccatgtgaagaaaaaaacctgagattgggagaagtccagccacaggctaaggga 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tgccttccatgtgaagaaaaaaacctgagattgggagaagtccagccacaggctaaggga 272

                                                                       
Query: 180 tcagagaggggccatggagcataaagtcatctctacaacagagagccttctatcactgca 239
           ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tcagagaggggccgtggagcagaaagtcatctctacaacagagagccttctatcactgca 212

                      
Query: 240 cttcttcgaaa 250
           |||||||||||
Sbjct: 211 cttcttcgaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)