Query= MSMg01no182_p12.b1 MSMg01no182_p12.b1 CHROMAT_FILE:
MSMg01no182_p12.b1 PHD_FILE: MSMg01no182_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:51 2005
(493 letters)
>mm_chr19_34249939_34250826
Length = 888
Score = 826 bits (427), Expect = 0.0
Identities = 473/491 (96%), Gaps = 5/491 (1%)
Strand = Plus / Plus
Query: 1 atgaaatctggaaacttggagcctgccccacacctgcatgcagctcaccaggtgtctttc 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 atgaaatctggaaacttggagcctgccccacacctgcatgcagctcaacaggtgtctttc 260
Query: 61 ctgggcatcttgtctggtctggcaggcagctcagtggtcagtctctgtggcttaactatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgggcatcttgtctggtctggcaggcagctcagtggtcagtctctgtggcttaactatg 320
Query: 121 ctgccaaagggaaggggcttgtgaatctatttccgtttctgaaaattcctgaggctattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgccaaagggaaggggcttgtgaatctatttccgtttctgaaaattcctgaggctattg 380
Query: 181 agctgtttactgactttaaatgctcccctgcaggatataaagcgtcaccccctctaagaa 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctgtttactgagtttaaatgctcccctgcaggatataaagcgtcaccccctctaagaa 440
Query: 241 caggggtcccaagcacactttgggcagttgcttaccagatgtcctgtatattagatattt 300
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 441 gaggggtcccaagcacactttgggcagttgcttaccagatatcctgcatattagatattt 500
Query: 301 acattataattcatagcaatagcaacattacagttattaaccaccaacaaaataacttat 360
||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||
Sbjct: 501 acattataattcatagcaatagcaacattacagctattaagtagcaacaaaataacttat 560
Query: 361 gatgctaaggtttctcagcagaaggaaggataccttggtggattggaaccaagggacgcc 420
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatgctagggtttctcagcagaaggaaggataccttggtggattggaaccaagggac--- 617
Query: 421 acaaaggcacatcgtgcaaccatggaaggggaaaaaaaagagagagtgggctgtgaagac 480
||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 618 --aaaggcacagcatgcaaccatggaaggggaaaaaaaacagagagtgggctgtgaagac 675
Query: 481 gatgtcttttt 491
|||||||||||
Sbjct: 676 gatgtcttttt 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 888
Length adjustment: 10
Effective length of query: 483
Effective length of database: 878
Effective search space: 424074
Effective search space used: 424074
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no182_p12.g1 MSMg01no182_p12.g1 CHROMAT_FILE:
MSMg01no182_p12.g1 PHD_FILE: MSMg01no182_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:51 2005
(310 letters)
>mm_chr19_34416509_34417218
Length = 710
Score = 576 bits (298), Expect = e-169
Identities = 304/306 (99%)
Strand = Plus / Minus
Query: 5 gaattcctggcaaagtgcagggttgatgctgtgattgacatgtagctgcctgctgttcta 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 510 gaattcctggcaaagtgcagggttgatgctgtgattgacatgtagctgcctgctgttcca 451
Query: 65 tgagaaaccattaaaaatagtttgacagagatgacttggaaggcaattctttctgggtca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tgagaaaccattaaaaatagtttgacagagatgacttggaaggcaattctttctgggtca 391
Query: 125 tctacatgtgggtggcaaggttagactaccctttatagaaagagaagagaggacttaccc 184
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tctgcatgtgggtggcaaggttagactaccctttatagaaagagaagagaggacttaccc 331
Query: 185 gctgaaattcctccccacaggccatttcctgatcacactttcccacacaagataaggctg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gctgaaattcctccccacaggccatttcctgatcacactttcccacacaagataaggctg 271
Query: 245 gcatacttctgcctgattcagtccaatcccttcagtggcatctaagtatctacttaacct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gcatacttctgcctgattcagtccaatcccttcagtggcatctaagtatctacttaacct 211
Query: 305 caaacc 310
||||||
Sbjct: 210 caaacc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space: 211001
Effective search space used: 211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
