Query= MSMg01no183_a19.b1 MSMg01no183_a19.b1 CHROMAT_FILE:
MSMg01no183_a19.b1 PHD_FILE: MSMg01no183_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:58 2005
(312 letters)
>mm_chr19_14388403_14389114
Length = 712
Score = 598 bits (309), Expect = e-175
Identities = 309/309 (100%)
Strand = Plus / Minus
Query: 4 ggaattctcccaattttcccagacctgcctgttcgctcattcgctgagagttattggtta 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ggaattctcccaattttcccagacctgcctgttcgctcattcgctgagagttattggtta 453
Query: 64 cctctgtgatcagggactgtccctccgtccctggtccaagtgttggagtgggatgttttc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cctctgtgatcagggactgtccctccgtccctggtccaagtgttggagtgggatgttttc 393
Query: 124 ctttccgctttcagtttctctgtgcagtattgcctcttactcctgtttctttctctccct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctttccgctttcagtttctctgtgcagtattgcctcttactcctgtttctttctctccct 333
Query: 184 ctgcctggtctaccttactaaggtaccatttcatttcttctttagttatgttttgttttt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ctgcctggtctaccttactaaggtaccatttcatttcttctttagttatgttttgttttt 273
Query: 244 ccttactctgacatatgtataatatgttgttttcttgcagtgtgctttacttccatttag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ccttactctgacatatgtataatatgttgttttcttgcagtgtgctttacttccatttag 213
Query: 304 gatgcttag 312
|||||||||
Sbjct: 212 gatgcttag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space: 213009
Effective search space used: 213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no183_a19.g1 MSMg01no183_a19.g1 CHROMAT_FILE:
MSMg01no183_a19.g1 PHD_FILE: MSMg01no183_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:58 2005
(639 letters)
>mm_chr19_14265671_14266709
Length = 1039
Score = 1199 bits (620), Expect = 0.0
Identities = 635/640 (99%), Gaps = 2/640 (0%)
Strand = Plus / Plus
Query: 1 cagtggagaactgaatgctctgaaataaaaagaattttatgtaaagcaaaatactttctt 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 cagtggagaactgaatgctctgaaatagaaagaattttatgtaaagcaaaatactttctt 260
Query: 61 tttatgttacataattatttta-taattttcagaatccctaaaaataataatgcgaagga 119
|||||||||||||||| ||||| |||||||||||||||||||||||||| |||| |||||
Sbjct: 261 tttatgttacataatt-ttttaataattttcagaatccctaaaaataattatgccaagga 319
Query: 120 ccaaaaagacaattaacacaaattcaatggccattattttgtcttttgttacagtttcag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccaaaaagacaattaacacaaattcaatggccattattttgtcttttgttacagtttcag 379
Query: 180 ttttctcaagtattctttaaatttgaaggacctaaaatttttaacaatattaatttcata 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttttctcaagtattctttaaatttgaaggacctaaaatttttaacaatattaatttcata 439
Query: 240 cttcccaaacactaactttataattactttatactttgagaaacacttttactgtcctca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cttcccaaacactaactttataattactttatactttgagaaacacttttactgtcctca 499
Query: 300 atgagtgactgatttcacccacttgtcagtgtcttccttcttattcccatacaattttca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atgagtgactgatttcacccacttgtcagtgtcttccttcttattcccatacaattttca 559
Query: 360 atttcagacacctcctattgaaaaagccttctaacaatttcctaattataagtattatga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atttcagacacctcctattgaaaaagccttctaacaatttcctaattataagtattatga 619
Query: 420 atgtaaatgagtagctatagaaaatggcctaactaatatatgcattagagagaatatact 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atgtaaatgagtagctatagaaaatggcctaactaatatatgcattagagagaatatact 679
Query: 480 gttaaattataaaactgaagattttaatgacagaataaggaaatgttgaaaggcataaaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gttaaattataaaactgaagattttaatgacagaataaggaaatgttgaaaggcataaaa 739
Query: 540 ttgcataaaaataaattaaaattaaaatcaagcatattgtctcctctcttcagagaagag 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttgcataaaaataaattaaaattaaaatcaagcatattgtctcctctcttcagagaagag 799
Query: 600 cagctgtttctatgctgtacttcctgaaagagctgatgtc 639
||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 cagctgtttctatgctgtacttcctgaaagagctgatgtc 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
