BAC Information

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BAC

Clone NameMSMg01-183F04
Chromosome19 (Build37)
Map Location 22,830,517 - 22,831,027
singlet/doubletsinglet
Overlap geneTrpm3
Upstream geneTmem2, EG433229, EG433230
Downstream geneKlf9, Smc5, Mamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183F04.T7 (MSMg01no183_f04.b1)MSMg01-183F04.TJ (MSMg01no183_f04.g1)
ACCAG375951AG375952
length727700
length of high quality
(start - end)
512 (45 - 556)148 (80 - 227)
definitionCHROMAT_FILE: MSMg01no183_f04.b1 PHD_FILE: MSMg01no183_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:18 2005CHROMAT_FILE: MSMg01no183_f04.g1 PHD_FILE: MSMg01no183_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGATTCTCTTCCCTCTATGTCTGCTTCTTAGCCTGGTGAGGGCTA
GCTTCTGAAAGCCCTCGGATGAGGGATGCTAGCTTTTTCCTTAGGGAATG
AATGCCAGGCACCTCCCTAGGTAAAGTGTTGGGAGATCCTGTTGCCTGGT
GGGGGTGTTGGAACTGATCCCACACCACCTCATTATCTCCAGCAGTCTCA
ACAGTGATACTGACATTTGACTCCCCATCGGTGGTGCTGTGGTGCCGGAC
TCTCAATATGGTTCTTGTCAAGAGTAGACATACAGAACAAAGAGTGTGTT
GCCATTGAGAGGCCACTTTGAGACAGTGCTGAGACAACCTGAGCCCCTGT
TTCCACTTTGGAAGTGCAAATCTATTTCTAAGTGAAAAAATACTGTTTTT
CATTGTATGGTATGTGTTTTTCTTAATACAGTGATAGCTCTTTATGAGCA
AATAATGATGGTAATGTGCTTTTTTTTTTAAGATTTGTTTGTTTATTTAT
TTATTTATCCCGTCTTTTCCAGTTTTGTGTCCTCTTTTTCATCTTTCCTT
TCCCCTTGTCCGCCCCCTTTATTATACGCTTTCTAAGTACCTCTCCTTCC
CTCCCTGTCCTCCCTTTTTTTTTTCCTTGCCGCCCCCCTTTTGCTGCCGC
ACGTCTTGTCTTTTACCCTAATTTTTT
NCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTAGCTCAGTACTATTTAG
TGGGCCTGAAAGACATAAGCATTCACATCTCTAACAAATTCCCCAATACT
GATGATATGGCTGTAGTCAGACCATCCACTGCACACAGATTCATGTCTAC
TGGTCCATGGTCAGATGTCATCCCTCCAAACACCGGTTGAGAAAAATAAA
CATTTTGCAACATCCGTAGCAATTTAACATTGCCCAAAGCCAAGTGCAGG
ATCATGTTTACGGGGTTCGGAAAAATTATGGTTTAACAATGAATTGAAGA
AGTTTTTTTTTTATTCTATTCCACACCCTGCTCATATTCATAAATTTTTT
TCATGTTAAATTTAAATATGTTTGGATGATATTCTTTTCCTCTCAANNAC
CTTCAAANNCTTTTTTGCCTCTCTACAATATTTCANNNNNNNNNNNNNCC
CNTNNNAAAATNNNNNACCTTTTCAAAAAAAAACAAACCCNTNNCCAAAA
ACTCAAACACTGTTAGCAGTCCCGATTCTAAATTATCACCCCCAAACCTC
CTTTCTGCCATCTAGCTGGAAGCGGCGGGTTTGGGGGGGCATTTNNNCNN
NCNNNCCNCNNNCNNNNNNNNNNNNNNNNNNNNNCNGAGGGAACAGCGAG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_f04.b1 MSMg01no183_f04.b1 CHROMAT_FILE:
MSMg01no183_f04.b1 PHD_FILE: MSMg01no183_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:18 2005
         (512 letters)



>mm_chr19_22830313_22831227
          Length = 915

 Score =  949 bits (491), Expect = 0.0
 Identities = 505/511 (98%), Gaps = 3/511 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgattctcttccctctatgtctgcttcttagcctggtgagggctagcttctga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 gaattcatgattctcttccctctatgtctgcttcttagcctggtgagggctagcttctga 656

                                                                       
Query: 65  aagccctcggatgagggatgctagctttttccttagggaatgaatgccaggcacctccct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 aagccctcggatgagggatgctagctttttccttagggaatgaatgccaggcacctccct 596

                                                                       
Query: 125 aggtaaagtgttgggagatcctgttgcctggtgggggtgttggaactgatcccacaccac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 aggtaaagtgttgggagatcctgttgcctggtgggggtgttggaactgatcccacaccac 536

                                                                       
Query: 185 ctcattatctccagcagtctcaacagtgatactgacatttgactccccatcggtggtgct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ctcattatctccagcagtctcaacagtgatactgacatttgactccccatcggtggtgct 476

                                                                       
Query: 245 gtggtgccggactctcaatatggttcttgtcaagagtagacatacagaacaaagagtgtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gtggtgccggactctcaatatggttcttgtcaagagtagacatacagaacaaagagtgtg 416

                                                                       
Query: 305 ttgccattgagaggccactttgagacagtgctgagacaacctgagcccctgtttccactt 364
           ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 415 ttgccattgagaggccattttgagacagtgctgagacaacctcagcccctgtttccactt 356

                                                                       
Query: 365 tggaagtgcaaatctatttctaagtgaaaaaatactgtttttcattgtatggtatgtgtt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tggaagtgcaaatctatttctaagtgaaaaaatactgtttttcattgtatggtatgtgtt 296

                                                                       
Query: 425 tttcttaatacagtgatagctctttatgagcaaataatgatggtaatgtgc---tttttt 481
           |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||
Sbjct: 295 tttcttaatacagtgatagctctttatgagcaaataatgatggtaatgtgcttttttttt 236

                                          
Query: 482 ttttaagatttgtttgtttatttatttattt 512
           ||||||||||||||||||| |||||||||||
Sbjct: 235 ttttaagatttgtttgtttgtttatttattt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 915
Length adjustment: 10
Effective length of query: 502
Effective length of database: 905
Effective search space:   454310
Effective search space used:   454310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)