Query= MSMg01no183_m11.b1 MSMg01no183_m11.b1 CHROMAT_FILE:
MSMg01no183_m11.b1 PHD_FILE: MSMg01no183_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:53 2005
(324 letters)
>mm_chr19_38048248_38048971
Length = 724
Score = 513 bits (265), Expect = e-150
Identities = 301/317 (94%), Gaps = 10/317 (3%)
Strand = Plus / Plus
Query: 17 gaattcttc-atatat-ccccctttcactttccttcttcctccttcctcct-------tc 67
||||||||| ||| || ||||| |||||||||||||||||||||||||||| ||
Sbjct: 209 gaattcttcaataaataccccc-ttcactttccttcttcctccttcctccttcctccctc 267
Query: 68 tactttccctcttttcttgagccttagtcttattatgtagcctaggatagcctagaactc 127
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 268 tactttccctcttttcttgagccttagtattattatgtagcctaggatagcctagaactc 327
Query: 128 acaattcccttcaagccttgtaaatgctaggattacagtcgtgtgctaccatgcctaaat 187
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 328 acaattcccttcaagccttgtaagtgctaggattacagtcgtgtgctaccatgcctaaat 387
Query: 188 taatgaattttcccacttcaggtaagcaactttctcaattttcctttttaatagtaacaa 247
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 388 taatgaattttcccacttcaggtaagcaactttctcaattttcatttttaatagtaacaa 447
Query: 248 agagttgtttttagacattttgatgattcttcctaaaaattggcttactctatttctggt 307
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 448 agagttgtttttagacatttggatgattcttcctagaaattggcttactctatttctggt 507
Query: 308 ctattttggacagccta 324
|||||||||||||||||
Sbjct: 508 ctattttggacagccta 524
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space: 225225
Effective search space used: 225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no183_m11.g1 MSMg01no183_m11.g1 CHROMAT_FILE:
MSMg01no183_m11.g1 PHD_FILE: MSMg01no183_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:53 2005
(282 letters)
>mm_chr19_38186442_38187123
Length = 682
Score = 530 bits (274), Expect = e-155
Identities = 280/282 (99%)
Strand = Plus / Minus
Query: 1 tttctaatggataccaccgtttcgccccattccacagtccccacagtttgtagaatcagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tttctaatggataccaccgtttcgccccattccacagtccccacagtttgtagaatcagg 423
Query: 61 aagaaaatcaagcattgtaataaaatgtgggtcctttcttgctccttgtcccacattaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aagaaaatcaagcattgtaataaaatgtgggtcctttcttgctccttgtcccacattaga 363
Query: 121 ttgactggccagcatctagccaggatttcaaatgtctctggcttgggtggaatgccttgt 180
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 362 ttgactggccagcatctagccaggatttcaaatgtccctggcttgggtagaatgccttgt 303
Query: 181 gtgcttttaggaagtgccacttaactctcacctgcaaaacaagcccctaggggatgtcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gtgcttttaggaagtgccacttaactctcacctgcaaaacaagcccctaggggatgtcct 243
Query: 241 ggggttcctcctcttcaggagccccacacatcagggcccacg 282
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ggggttcctcctcttcaggagccccacacatcagggcccacg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
