BAC Information

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BAC

Clone NameMSMg01-184A10
Chromosome19 (Build37)
Map Location 35,108,579 - 35,258,171
singlet/doubletdoublet
Overlap geneLOC383464
Upstream geneLipk, EG383462, Lipn, Ankrd22, Stambpl1, Acta2, Fas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1
Downstream geneLOC100042292, A830019P07Rik, Htr7, Rpp30, Ankrd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184A10.T7 (MSMg01no184_a10.b1)MSMg01-184A10.TJ (MSMg01no184_a10.g1)
ACCAG376438AG376439
length742703
length of high quality
(start - end)
306 (60 - 365)283 (76 - 358)
definitionCHROMAT_FILE: MSMg01no184_a10.b1 PHD_FILE: MSMg01no184_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:13 2005CHROMAT_FILE: MSMg01no184_a10.g1 PHD_FILE: MSMg01no184_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,108,579 - 35,108,880)(35,257,889 - 35,258,171)
sequence
TAAAANNNNGGTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCCCATCATGAACTTACAATCAATTGGCCGAAA
GTCTCATTTGTGGTAACATGGTAGTTTGGGCTCGGCCCTAACTTCTCTAC
TCCTAGAAGAACTTAGTGATTAGGATACAAAGTGCTTCTGGACCAGAACT
ACACTCACTTCAGTCTCCTTCCTGGTTCTTTGAACTCAGGTGATGTTCCA
AAGAGTTCCGAGGAGATAGCAGTCATTGTGACCCTTCTTCTTCTCTGCCG
TCCATCTCAGGCCTGTTTGCTAGGAGCTTTCCAGTATCAGGAAGAACAGG
AGCATTCCCTGTTCACCTTTTTCTTATCCCACCCCCCCGAGCAGAACAAA
CATACCTTGAAAGTAGAAAGAGACCCAAACAAAAACAATGACGACGACGC
CACAGCCACCACCACCACCATCACAACAACAAAACAAAAAACCCCACAAC
ACCAGAAGGAGAAGATTGTGAGAGATCTAAGAGCCTGAGCTCTGGAGTCT
AAGGTCATAGACCAATCTTGGATCCCTGGGGTGGCTTTGGTGAAACCTTC
TTAGCCTTTCGAACTGACTCCCCTCTCTCATTTTTCACAACCGCCCTTGA
GAACACACTTGCACTTAAAGTCTATGCCCTGTTTCTTCTAAATCTAGGCT
TGTAGTTTTTTCCTCCCCCCCACTTCCTTATTTTGATCGTTA
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGGCAAATCTACAGTACAGTGTGA
GACTGTCTCAAAAAGAGAAGAAGGAAGAAAGGAGAAAGAGATCTTCCTAG
TACTCAAACAAATAGCACAGGAGACCTGGATGTGGAGGCACACAGTAGAA
ACCCCAGCATTTGAAAAGCTGAGAGAGGAGGATTTTGAGTTCTAGACCAG
ACTGGGCTACAAAGGAAGAACATGCTTCAAACAGACAAGCAAAGCAGCAA
AAACATGAAGTACACTCCGAACATATACATGACAGTAGAAGCAGACAATA
AACATTCTTATTATCCTCCCCCCCGCCCCCTATATTAGTTAATCATCGTT
GTTGCATGACAGTTATACCATAAAAGCAACTATGATAACTACGACACTTA
AAATACTGAACGTTAATAATACTTCTTTCAATGTATTTTCCTGCAACTAT
CTATGGAAAGGTGAACAGACTCACCTAAAAATATTTTGCAATTGAGTTTT
CAGACAGTTTTGATAGTGGCATTTTCAATTTTATTAATACTATAATTTTT
GCAATGATACAGTAAAGACTGCTTCCCATTCCTTCAGGGAGCATCCCTTT
TAAATAATAATTGAAGGATGTATTTTTTACATAAACCGTTGTTATGAGCC
CCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_a10.b1 MSMg01no184_a10.b1 CHROMAT_FILE:
MSMg01no184_a10.b1 PHD_FILE: MSMg01no184_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:13 2005
         (306 letters)



>mm_chr19_35108375_35109080
          Length = 706

 Score =  538 bits (278), Expect = e-157
 Identities = 296/302 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccatcatgaacttacaatcaattggccgaaagtctcatttgtggtaacatggta 64
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattcccatcatgaacttacaatcaattggccgaaagtctcatttgtagtaacatggta 264

                                                                       
Query: 65  gtttgggctcggccctaacttctctactcctagaagaacttagtgattaggatacaaagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtttgggctcggccctaacttctctactcctagaagaacttagtgattaggatacaaagt 324

                                                                       
Query: 125 gcttctggaccagaactacactcacttcagtctccttcctggttctttgaactcaggtga 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 325 gcttctggaccagaactacactcacttcagtctccttcctggttctttgaactcagatga 384

                                                                       
Query: 185 tgttccaaagagttccgaggagatagcagtcattgtgacccttcttcttctctgccgtcc 244
           |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 385 tgttccaaagagttccaaggagatagcagtcattgtgacccttcttctcctctgccatcc 444

                                                                       
Query: 245 atctcaggcctgtttgctaggagctttccagtatcaggaagaacaggagcattccctgtt 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 atctcaggcctgtttgctaggagctttccagaatcaggaagaacaggagcattccctgtt 504

             
Query: 305 ca 306
           ||
Sbjct: 505 ca 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no184_a10.g1 MSMg01no184_a10.g1 CHROMAT_FILE:
MSMg01no184_a10.g1 PHD_FILE: MSMg01no184_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:13 2005
         (283 letters)



>mm_chr19_35257872_35258554
          Length = 683

 Score =  540 bits (279), Expect = e-158
 Identities = 282/283 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggcaaatctacagtacagtgtgagactgtctcaaaaagagaagaaggaagaaaggaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ctggcaaatctacagtacagtgtgagactgtctcaaaaagagaagaaggaagaaaggaga 241

                                                                       
Query: 61  aagagatcttcctagtactcaaacaaatagcacaggagacctggatgtggaggcacacag 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aagaaatcttcctagtactcaaacaaatagcacaggagacctggatgtggaggcacacag 181

                                                                       
Query: 121 tagaaaccccagcatttgaaaagctgagagaggaggattttgagttctagaccagactgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tagaaaccccagcatttgaaaagctgagagaggaggattttgagttctagaccagactgg 121

                                                                       
Query: 181 gctacaaaggaagaacatgcttcaaacagacaagcaaagcagcaaaaacatgaagtacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gctacaaaggaagaacatgcttcaaacagacaagcaaagcagcaaaaacatgaagtacac 61

                                                      
Query: 241 tccgaacatatacatgacagtagaagcagacaataaacattct 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  tccgaacatatacatgacagtagaagcagacaataaacattct 18


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)