BAC Information

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BAC

Clone NameMSMg01-184B04
Chromosome19 (Build37)
Map Location 34,139,117 - 34,139,395
singlet/doubletsinglet
Overlap geneEG383462
Upstream gene6530404N21Rik, LOC638381, EG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127, Lipf, Lipk
Downstream geneLipn, Ankrd22, Stambpl1, Acta2, Fas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1, LOC383464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184B04.T7 (MSMg01no184_b04.b1)MSMg01-184B04.TJ (MSMg01no184_b04.g1)
ACCAG376469AG376470
length759777
length of high quality
(start - end)
---281 (80 - 360)
definitionCHROMAT_FILE: MSMg01no184_b04.b1 PHD_FILE: MSMg01no184_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:17 2005CHROMAT_FILE: MSMg01no184_b04.g1 PHD_FILE: MSMg01no184_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCAACGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAAAGCCGCTGAAGACTCAGTGACCCAAAGGAGGAAG
TGGCCCTTTGCCTTCATGTGGAGGATGTCCAGAAACTTACACGAAACTGG
ACCAGAAGGTGGAAAATATATGACCCATTGAAAATATAATTCAGATACTG
TAGTCTCCCCTCCCCCAGACTGAAACCTGCTTGCTCAGGGGTGAAGCTTG
CCGGCTCAATCGTTCTGCCATGCCCACTGCTGGAACCTGCCACTTTGCTG
TTCGGAACTGTGCACGTGGTCACCCTGCTATTGCACCCCAAGATTAATTG
GAGGGAATCGGCCCCCTTCTCCTGCTTTATAACTGTGTGTGGAACAGTAA
AGTTGAGCTTTGATCAGAATGCCTGTCTTAGCTGCATTTCTTTCTCTCGC
CGACTAGCCCCTCTTCTCTTCCAGGTTTCCAAAATGCCTTTCCAGGCTAG
AACCCAAGGTGTGATCTACTGGACAGACACAACAAGAAACTATAAGGCCG
TTAGAGCATTTTGGTCATAGACTGTAGTAGGCAATCCTCAGTTCCTTATT
TATTTTTCAACTTCCTGCTAACAGTTGATTTTTCCCAGGCAGGATGAAGG
CAGTCACCCATTCTCTAGATTTCCAAGTTAATCTGGCAAGCTATTACCTT
AGAAATTAAATAATCGGAAAAATCCTTCTTTCTTTGCTCTTGATGGAATC
ACTAAAAGA
AACGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATGCAAATGAGCTGTAGAG
AATGTCATACATAAATTGTATACATTAACCAAGGTGGGTGGGTGAACCTG
CTTGGAGGTAAAGGAGGATAGTCCTTCCTTTCACAAAGCTTTGACCTTTG
CCATTAGCACATCCTGAGCCTATACTAAGTCATGAGTGTTACCAAGGCCT
GCCATCAGCACTTTTGGCCCTAACTCCTCTTTAAATGTGAGTTTTTTCCC
TAGGATAACTTATATGGAGATGGGTATGTGTTCAGCTAGATTATGGTACA
GCCCCTTCAAAAAGTTTTTTTATCCCCCCCCACCACGGATAATCTGTTCT
TTTGAATTTATTTCTTTCTCCCTAACATAGTTATACTATTTTTTTCAGAT
ACATGAAATTCTAGTTGTCGCGAAAAAACAGATTTTTTCGTTCACCAACA
TTTTATGTAAAGAGATCTTTCTTGCTAGGTGATGTCTCAAGAATCTGCAC
TCTACTGTTATTATATAATTGAGTTATTAACCACTTGACTTTTAATGACA
GTTAGACGAATATAACATAATTTTATTCGTATCTATAACAAATTCTTTCC
ACTACACCTTTAGATATGCTATCTAATAACACAAATGCGCACATTAAAAT
TCTCAATCACCTGACTAACTTTTGCTCACAAATTTGTATTCTACACTTGA
GTTTCCTCGGTCTCACTCCATTTCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_b04.g1 MSMg01no184_b04.g1 CHROMAT_FILE:
MSMg01no184_b04.g1 PHD_FILE: MSMg01no184_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:17 2005
         (281 letters)



>mm_chr19_34138917_34139596
          Length = 680

 Score =  511 bits (264), Expect = e-149
 Identities = 276/280 (98%), Gaps = 1/280 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatgcaaatgagctgtagagaatgtcatacataaattgtatacattaaccaaggtgggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 aaatgcaaatgagctgtagagaatgtcatacataaattgtatacattaagcaaggtgggt 260

                                                                       
Query: 61  gggtgaacctgcttggaggtaaaggaggatagtccttcctttcacaaagctttgaccttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggtgaacctgcttggaggtaaaggaggatagtccttcctttcacaaagctttgaccttt 320

                                                                       
Query: 121 gccattagcacatcctgagcctatactaagtcatgagtgttaccaaggcctgccatcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccattagcacatcctgagcctatactaagtcatgagtgttaccaaggcctgccatcagc 380

                                                                       
Query: 181 acttttggccctaactcctctttaaatgtgagttttttccctaggataacttatatggag 240
           | ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 381 aattttggccctaactcctctttaaatgtgagttttt-ccctaggatagcttatatggag 439

                                                   
Query: 241 atgggtatgtgttcagctagattatggtacagccccttca 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atgggtatgtgttcagctagattatggtacagccccttca 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 680
Length adjustment: 9
Effective length of query: 272
Effective length of database: 671
Effective search space:   182512
Effective search space used:   182512
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)