Query= MSMg01no185_h20.b1 MSMg01no185_h20.b1 CHROMAT_FILE:
MSMg01no185_h20.b1 PHD_FILE: MSMg01no185_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:12 2005
(321 letters)
>mm_chr19_24781406_24782126
Length = 721
Score = 559 bits (289), Expect = e-164
Identities = 303/315 (96%), Gaps = 12/315 (3%)
Strand = Plus / Minus
Query: 5 gaattccaagaggaagaggctttggctaatcattaacagagacaaagacaggacaccgcg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gaattccaagaggaagaggctttggctaatcattaacagagacaaagacaggacaccgcg 329
Query: 65 aagctgctggatccctcctgacaagtggcgcaaggacttgtctgttcacccttagagtct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aagctgctggatccctcctgacaagtggcgcaaggacttgtctgttcacccttagagtct 269
Query: 125 gcttcttcagttttgtcacctggattgcaaagaacacatccctatgtgagcacatgagtg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gcttcttcagttttgtcacctggattgcaaagaacacatccctatgtgagcacatgagtg 209
Query: 185 ggtgcacatgcacaaacacacacacacacacacacacacacacacacacacacacacaca 244
||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 208 ggtgcacatgcacaa------------acacacacacacacacacacacacacacacaca 161
Query: 245 cacacacacacacctgttaaagtactctttagtctatagttctgttaagtaactgcgtac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 cacacacacacacctgttaaagtactctttagtctatagttctgttaagtaactgcgtac 101
Query: 305 atttaacccactttg 319
|||||||||||||||
Sbjct: 100 atttaacccactttg 86
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space: 222144
Effective search space used: 222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no185_h20.g1 MSMg01no185_h20.g1 CHROMAT_FILE:
MSMg01no185_h20.g1 PHD_FILE: MSMg01no185_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:12 2005
(505 letters)
>mm_chr19_24722155_24723059
Length = 905
Score = 841 bits (435), Expect = 0.0
Identities = 489/507 (96%), Gaps = 4/507 (0%)
Strand = Plus / Plus
Query: 1 acattgatcatttatcaggaatgtcatgtagagcatctcttcaaatgttagactgtggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acattgatcatttatcaggaatgtcatgtagagcatctcttcaaatgttagactgtggcc 260
Query: 61 ttatagttaggagacaagggaaaagactgactgacccaaaataaataataggaaaagaat 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatagttaagagacaagggaaaagactgactgacccaaaataaataataggaaaagaat 320
Query: 121 gccaagtggagcagagggtggtataaggacattagactctgcatgatactcagtgtggcc 180
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 gccaagtggagcagagggtggtataagggtattagactctgcatgatactcagtgtggcc 380
Query: 181 aggagacctggggaaagag-acaggatattaactacaaggcggagccagggaaatcaccc 239
|||||| ||||||||| || ||||||||||||||| |||| ||||||||||||||||| |
Sbjct: 381 aggagaactggggaaa-aggacaggatattaactataaggtggagccagggaaatcactc 439
Query: 240 aatcaataaagtacttgtcacacaagtttgacgtcagagcttcaaaaacc-atggaaaag 298
|||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 440 aatcaataaagtgcttgtcacacaagtttgacgtcagagcttcaaaa-ccgatggaaaag 498
Query: 299 ccagagacttggtgcacttgtaaccccgggactgggtggctgggggatgggtgggtccct 358
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 499 ccagagacttagtgcacttgtaaccccgggactgggcggctgggggatgggtgggtccct 558
Query: 359 acagctcactgaccagccagtttagccaatcagcaatctccatgttcagtaagggactct 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 acagctcactgaccagccagtttagccaatcagcaatctccatgttcagtaagggactct 618
Query: 419 gtctccaaaatataaggtagaactgactcaagaaagcacctgcggcttgagtacacatat 478
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 619 gtctccaaaatataaggtagaattgactcaagaaggcacctgcggcttgagtacacatat 678
Query: 479 gcgcacactcatacacaacacacacac 505
|||||| | ||||||||||||||||||
Sbjct: 679 gcgcacgcgcatacacaacacacacac 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
