BAC Information

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BAC

Clone NameMSMg01-185J19
Chromosome19 (Build37)
Map Location 55,931,502 - 56,094,850
singlet/doubletdoublet
Overlap geneTcf7l2
Upstream geneGpam, Tectb, Gucy2g, Acsl5, Zdhhc6, Vti1a, LOC100043479, Ppnr
Downstream geneLOC100043484, Habp2, Nrap, Casp7, 9930023K05Rik, Dclre1a, Nhlrc2, Adrb1, EG629643, A630007B06Rik, 1700010L13Rik, Tdrd1, Vwa2, Afap1l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185J19.T7 (MSMg01no185_j19.b1)MSMg01-185J19.TJ (MSMg01no185_j19.g1)
ACCAG377550AG377551
length767798
length of high quality
(start - end)		321 (58 - 378)287 (89 - 375)
definitionCHROMAT_FILE: MSMg01no185_j19.b1 PHD_FILE: MSMg01no185_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:21 2005CHROMAT_FILE: MSMg01no185_j19.g1 PHD_FILE: MSMg01no185_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,931,502 - 55,931,815)(56,094,564 - 56,094,850)
sequence
ACCCGGGCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCCAGGGTTCTTCTGGAAGTCTGTCATTTGCATTT
TAAAGCATTTCATCTCTACTGATCCAGGAGAAGGGCCTTGTGTACCCACA
CCAGCTTATCATTGTTTTGCAAGGCTATCTATTGGCCCTAGTGGTACATG
AGATTCCCAATCTTCCAGGTCTCGACTCCATTTTAGGCAGATTACCCTCC
CTCTACAGGGAACAATTTCATTTTTAAAGAGAAGATTTTCCACCAGAAAG
CATAGAGCTAGAACAAGTCACCTTGCCCCATGGCCCATGACTCTCTCAAG
GCTATATTGGAGGGATTTAACTTGCTTTTCCATGCGCCTACCGCTACTGT
AGGGTAGCTGTTGATGTGGCTCACTGCCCCCCCCCCCACTTAAACTGCAC
TTGTGAAAACTCAACTGCATGGTTCTCCAACGTGAGGTTGTGCGTGACAG
CCACTGCCATGTCATAAGCTTGGCCACAGGTAGACACTCATCCCCAAAAC
TGGACTGAGAGAAAGAGCTCCCTCTATCTACAGCATGTTCCTCATCATGC
TTGCCTCACCCGATGAACTCCCAGTTCTCTGTATCCCGTCACCCCTTTCA
GCTTACCTGTCCCCGTCCTTTCCAGCGCTCCCTTTTTCAACACCTTTTGT
GCTTCCCGTCTTTCTTTTTTTATCCTTTCTTTATCCCCTCTCCCCCTTAT
CCATCTTTATTCCCCTA

GCTCGGNTTCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATGCCCACCCT
GTCCAAGCCCGACATACCCAACCGAGGTAGCCTTAGCTGGAGAGCTGGAG
AGACTAAGACATCTTTTCAGGGTTCTACCTCATGTCTGTGAATCCAAGGG
CTCCTGTGGACTCTCCGAGTAAGGGGAACTCAGAAAAGAGCCTGACGTTA
TTGGCTTTCCAATGGAGAAGGAGAAAAACTGGAGAGCAGCGTGGAGGAAC
AGGGCAGAGGGAGGGCCCTGAACAAAGAGGCTGGGCAAGTTTACCAGAAG
CAGACCTGAAGATTGGGGCGGGGGGTTTTTTTTTCCCCCCCCCCCCCCCN
NNNNNNNNNNNNNNNNNNNTNNTNGNNCCCCCCCCTTTTTAAAAAAAAAA
ATTTGTGGGGGGGGCGCGTTTTTTTTATTCCTCTCCCCTTTACTATCATC
CCGTCTTTACTTTTTTTTTCTTTTTTTACCTACTTTTATCATCCTACTAC
TTTTCCCCTTTACTTCTTGCATCTTTTTCATTTTTTTTCTATTTTTCCTA
CCACCTTTTTTTTCCTTCTCTCCTTCATCTATTCTCCGTTTCCTTCAGTC
GAATTTATCTTCCATTCTCCTTTTTTTTCTTATTCTTTTTTTTATTTTCC
CTTTTTCACTTTATATTTCGTTCTTCCGTCTCTTTCTTTATCACTTTATC
TTCGATCACTTTTTTTTCTCTAGAGTTTATAATTCCACACTCTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_j19.b1 MSMg01no185_j19.b1 CHROMAT_FILE:
MSMg01no185_j19.b1 PHD_FILE: MSMg01no185_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:21 2005
         (321 letters)



>mm_chr19_55931298_55932018
          Length = 721

 Score =  553 bits (286), Expect = e-162
 Identities = 307/314 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagggttcttctggaagtctgtcatttgcattttaaagcatttcatctctactg 64
           ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||
Sbjct: 205 gaattccagggttcttctggaagtctgtcgtttgcgttttaaagcatttcatctcaactg 264

                                                                       
Query: 65  atccaggagaagggccttgtgtacccacaccagcttatcattgttttgcaaggctatcta 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atccaggagaaggggcttgtgtacccacaccagcttatcattgttttgcaaggctatcta 324

                                                                       
Query: 125 ttggccctagtggtacatgagattcccaatcttccaggtctcgactccattttaggcaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttggccctagtggtacatgagattcccaatcttccaggtctcgactccattttaggcaga 384

                                                                       
Query: 185 ttaccctccctctacagggaacaatttcatttttaaagagaagattttccaccagaaagc 244
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttaccctcccgctacagggaacaatttcatttttaaagagaagattttccaccagaaagc 444

                                                                       
Query: 245 atagagctagaacaagtcaccttgccccatggcccatgactctctcaaggctatattgga 304
           | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agagatctagaacaagtcaccttgccccatggcccatgactctctcaaggctatattgga 504

                         
Query: 305 gggatttaacttgc 318
           ||||||||||||||
Sbjct: 505 gggatttaacttgc 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no185_j19.g1 MSMg01no185_j19.g1 CHROMAT_FILE:
MSMg01no185_j19.g1 PHD_FILE: MSMg01no185_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:21 2005
         (287 letters)



>mm_chr19_56094364_56095050
          Length = 687

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgcccaccctgtccaagcccgacatacccaaccgaggtagccttagctggagagctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tatgcccaccctgtccaagcccgacatacccaaccgaggtagccttagctggagagctgg 428

                                                                       
Query: 61  agagactaagacatcttttcagggttctacctcatgtctgtgaatccaagggctcctgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 agagactaagacatcttttcagggttctacctcatgtctgtgaatccaagggctcctgtg 368

                                                                       
Query: 121 gactctccgagtaaggggaactcagaaaagagcctgacgttattggctttccaatggaga 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gactctccgagtaaggggaagtcagaaaagagcctgacgttattggctttccaatggaga 308

                                                                       
Query: 181 aggagaaaaactggagagcagcgtggaggaacagggcagagggagggccctgaacaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aggagaaaaactggagagcagcgtggaggaacagggcagagggagggccctgaacaaaga 248

                                                          
Query: 241 ggctgggcaagtttaccagaagcagacctgaagattggggcgggggg 287
           |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 247 ggctgggcaagtttaccagaagcagacctgaagattggggtgggggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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