BAC Information

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BAC

Clone NameMSMg01-187C15
Chromosome19 (Build37)
Map Location 15,877,936 - 15,878,218
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433225, EG635497, Pomc-ps1, LOC667482
Downstream genePsat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187C15.T7 (MSMg01no187_c15.b1)MSMg01-187C15.TJ (MSMg01no187_c15.g1)
ACCAG378610AG378611
length795726
length of high quality
(start - end)
170 (47 - 216)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no187_c15.b1 PHD_FILE: MSMg01no187_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:23 2005CHROMAT_FILE: MSMg01no187_c15.g1 PHD_FILE: MSMg01no187_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAGTCAGGAGCATGGAAGCAGGAGCTGGTGCAGGGGTGTGGGGG
AGGGCTGCTTACTGGCTCGCTCATCCTTGCAGTGGTAATTATTATGCTGG
AGGTTAGCTATGCCCCTTTGTTGCCTTTAAATATCTGTTGGGGGGGGTTT
CTACTCCATTTCACGGACCTTTAGATTTATGCTCACCTTTACAACACTAT
AGCTGGTCACATAACTTCCATCCAGGCTATTTTTTCTGTTTCCGGTCCTA
ATCCCAAACATATTATTTGCCTGCGTTTCCCTTGCCCCGCTCCTGATTAT
TTTTCCTGGCTTTCCTCCCCCCCCCCCCCATGTATTCATGTTCGTATTTT
GGAGTTCTGCGTGCCCCCCCCAAAAAAAAAAAATTTTTCTCTGCTGGTCG
TCCCCACCCCTTTCCCTACCCTACTTCTCTGTCACACTTCTTCTGTACCA
TTTACCCATTATTTCTCCTTCCCCCTCTTAATTTCCTCACCTTATCATAT
TTTTTTCATTCCCCCCTTCTCCTCTACGTCTTCTTCGCTTCTATCTTACA
CCTATTTAACCCCCCCCATTTTCTCTCCTTTCTTCTTTTTTATTCCCTTT
ATTTCCCCCCCCTTCCTCTTTCTCAATTTATCCCTCCTCCTTTCACCCTT
TTTCCCCCCCCCTTTTTTTCCCTATTTCACCCCCCACTTCTTGTCCCCCT
TTATATTACCTTATCCCCCTTCATTACTTCCCCTTTAACTTATTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCATGGAGAAATCTTGATTTGTT
CAAGGTCTTTCATGTTTTCTACAGAGAAGGGATTATGTCTTCTTAAAGAG
GGGCCTTGCTTAAAAAGCTACAAAGTATAAGAAAAGGATTTAGGGCAGAG
GGGCCTGTGGTTAAGTAGCTGAGGGGTACAGGGAATTTTAGAGCAAGGGA
TTATTTAAAGCCATAAAGTTCAAAAAATAATTGGTTTAGCACTACTGGGT
CAGTGCTGGCAAGCTCACAGTAAGGCAGCTAAGCATGGGCTAATATTCAT
TTTACTTTGTTTAATTATCGCATGGCATCCAGGAGAGGAGGAGCAAGAAC
GCGCTCCCTCCCTGGCAATCAGGAAGTGCAGTATATTTGGTGTGTGCCTT
TCGGGCTTGTGTTTTATGATGGGATGTCCAGAATGTAAGAATCACAAGAA
GTGTTACTTAAAACACAGGCACTCTTGTCTTAGAATAAGCCTGCTACCCC
AGAAGCAGAGAATAAAGACACTATTAGCGTGGTTTTTTTGCTGTTGTTGT
TGCCTTTTTGCTCACCTTCCCCCAAATTCTTTCCTTCCCTTTTCTTAATA
CTCTCATTTTTTATCCCCCATTTTTCACCCCCCTTTTTCTATCTTTCTTT
TCTAATTTCTCCTCTTTCCCATTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_c15.g1 MSMg01no187_c15.g1 CHROMAT_FILE:
MSMg01no187_c15.g1 PHD_FILE: MSMg01no187_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:23 2005
         (283 letters)



>mm_chr19_15877736_15878418
          Length = 683

 Score =  547 bits (283), Expect = e-160
 Identities = 283/283 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccatggagaaatcttgatttgttcaaggtctttcatgttttctacagagaagggattat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccatggagaaatcttgatttgttcaaggtctttcatgttttctacagagaagggattat 260

                                                                       
Query: 61  gtcttcttaaagaggggccttgcttaaaaagctacaaagtataagaaaaggatttagggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcttcttaaagaggggccttgcttaaaaagctacaaagtataagaaaaggatttagggc 320

                                                                       
Query: 121 agaggggcctgtggttaagtagctgaggggtacagggaattttagagcaagggattattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaggggcctgtggttaagtagctgaggggtacagggaattttagagcaagggattattt 380

                                                                       
Query: 181 aaagccataaagttcaaaaaataattggtttagcactactgggtcagtgctggcaagctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagccataaagttcaaaaaataattggtttagcactactgggtcagtgctggcaagctc 440

                                                      
Query: 241 acagtaaggcagctaagcatgggctaatattcattttactttg 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagtaaggcagctaagcatgggctaatattcattttactttg 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)