Query= MSMg01no188_d12.b1 MSMg01no188_d12.b1 CHROMAT_FILE:
MSMg01no188_d12.b1 PHD_FILE: MSMg01no188_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:48 2005
(321 letters)
>mm_chr19_41635003_41635722
Length = 720
Score = 590 bits (305), Expect = e-173
Identities = 311/313 (99%), Gaps = 1/313 (0%)
Strand = Plus / Plus
Query: 5 gaattcctgataagtaaagccagtggaatgtaatctttacaatcatcagattaaaattac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgataagtaaagccagtggaatgtaatctttacaatcatcagattaaaattac 264
Query: 65 tattttgtgcaaagcaaaatccacaccacacatatcctatatgctagtcttctgagaaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tattttgtgcaaagcaaaatccacaccacacatatcctatatgctagtcttctgagaaag 324
Query: 125 gtgattagacccttctaaatgcttagccaaaccgtaaaatcattgacatttctgagtaaa 184
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 325 gtgattagacccttctaaatgcttagccaaaccgtaaaat-attgacatttctgagtaaa 383
Query: 185 ataaaaaagtagccagtgttccttaggttaaaattggtcattccgggagagtactaacaa 244
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 384 ataaaaaagtagccagtgttccttaggttaaaattggtcattctgggagagtactaacaa 443
Query: 245 cttgagaagtagtgcgaatatgtccagatagtcctcaggcacagattcctgactgaaaac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cttgagaagtagtgcgaatatgtccagatagtcctcaggcacagattcctgactgaaaac 503
Query: 305 tttgaacccatta 317
|||||||||||||
Sbjct: 504 tttgaacccatta 516
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 720
Length adjustment: 9
Effective length of query: 312
Effective length of database: 711
Effective search space: 221832
Effective search space used: 221832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no188_d12.g1 MSMg01no188_d12.g1 CHROMAT_FILE:
MSMg01no188_d12.g1 PHD_FILE: MSMg01no188_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:48 2005
(282 letters)
>mm_chr19_41744284_41744965
Length = 682
Score = 507 bits (262), Expect = e-148
Identities = 277/282 (98%)
Strand = Plus / Minus
Query: 1 ttctgcttctctggctctgttcacatctgcgttgctctgaacccactccacgtgcctggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ttctgcttctctggctctgttcacatctgcgttgctctgaacccactccacgtgcctggt 423
Query: 61 tcagctgtggtcttaagacacagttcgcagctgaggccccgggctcctgggagacgggtg 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tcagctgtggtcttgagacacagttcgcagctgaggccccgggctcctgggagacgggtg 363
Query: 121 ttcaatctctggatggggatatatgtgctcagtgcggcatctctagaagtggtggcagta 180
|||| |||||||||| |||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 362 ttcattctctggatgtggatatatgtgctcagtgtggcatctctagaggtggtggcagta 303
Query: 181 ggggtgtgagcactgactctcccggccctcctgctctcctctctcaaagccttttcagcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ggggtgtgagcactgactctcccggccctcctgctctcctctctcaaagccttttcagcg 243
Query: 241 tggccgctggaagcttcaagctgatgatgagggactgtaaat 282
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tggccgctggaagcttcaagctgatgatgagggactgtaaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
