BAC Information

Click to search

BAC

Clone NameMSMg01-188I19
Chromosome19 (Build37)
Map Location 36,291,674 - 36,291,980
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042292, A830019P07Rik, Htr7, Rpp30, Ankrd1
Downstream geneLOC668195, Pcgf5, LOC668201, Hectd2, LOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1, Cpeb3, March5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188I19.T7 (MSMg01no188_i19.b1)MSMg01-188I19.TJ (MSMg01no188_i19.g1)
ACCAG379537AG379538
length738809
length of high quality
(start - end)
311 (62 - 372)121 (76 - 196)
definitionCHROMAT_FILE: MSMg01no188_i19.b1 PHD_FILE: MSMg01no188_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:14 2005CHROMAT_FILE: MSMg01no188_i19.g1 PHD_FILE: MSMg01no188_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTCTTTTNNCCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGCGGAATTCTTAATGAGAATACTGAGATAGCAACCATA
ATAGGTCACTCAAACAGCAGAGTGCAGATCTAGGTCCTGGGGTCTCTCAG
TCCCGAGATATCCAAGGTGGGACCTACCCACCGCCTACGCTCCACTCTGT
GCCAGTCTCCTTCCGACCAAAGCTGGAGACTGGCAAGTGTCAACATGCCT
GCCCCCAGCCCACACCTCCTTACCCATGCCACTAGCAATCTAGCCTACAT
TTGTGCACATTCCTACAGAGACAATTTCCATAGCAACAGCAAAACCATAT
CAAAAAAGGCACCTGAGCTATGTTTTTTTGGTCACCTCACCCTCTTGAAG
AAGTCGTCTATTCTATGGAATTACAGGCTACTGCCACTTAGAATTCATTA
CCTCGCTAACACTATTAATGCATGTGCATATTCCTAGTCCTGGGTCACTG
ATTTACATTTTCATTATTTATAAATATTTTACTTTTCTCTTTTTAAGCTG
TCCTTTCCGGACAGCTATGGTTCGGCGGCATTTTAATGATCTATGAAGGA
AGAAGCAAGAAGCAATCGCAGCAGGAGATTCTGAGTGCCTACTATTTGAG
TACCCTGCACTCCTACCTAGCAGAATTCATTTTCAGAGAAATGCAAGCAG
AGGAAGGGCTGCCTTGAGCCCAGGCTGAGTCTTATGCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGACACTCTGTCTCTTCCTCCCAA
GTGATGGGATTATAGGCGGGCACCACCACACCTGGCTTCCTGCTGGTTCC
CCTTAGGCAATGTTCATTTAATGATCTGATTCTCTACTTTAGAGGGCTAC
ATCCTATCTGGCCTGAATGTTAACAGTGAAACTCGGCCAGAGAGTCTTAC
ACTTGTCCCAAGGATGCCTCACTTCAGGGGCAGTGCTCTTGACAAGGAAC
AGTCCCCCAGGAGCTTGCTCCAAAAGTCTTGGAAAGGCACTCCTCGGAAG
GTTGCTTATTTTTTTTTTGCCCCCCCCCCAACCCCCCCTTTAGGAAAGCC
CGGAAGGTCAAAAGGGGGAATCGCCAAAAAAAAAATAACCTCAATGGTAT
GGGGAAAAAATACACATGCAATCTGACGATTGATTAAACACACTGCTGCT
CAAGACAAAGAGAACCTTCAAAAACTATCTTTCGTTTCCCCCTCCCAACT
ATGGGGCGGGTGTTGCTTTCTTCTTCTTCCCCCCCTTTTTTCTCCTCTCT
AATTCTCACCCTTATATTTTACCATATTAATTTTTCTTTCTTTTTTCTTC
CCCTCCCCTTTTTGATCTTACCTTTCTTCCCCCCCCCCTGTCCTTCTCAG
AAAAAGAACCCGTCCCCCACAACCTAATCCATACTTTATACTTTTATTTT
ACCTACTTCGCCTCTCTACCCCTACCTCCTTCTCCTTCCTCCTCCTCTCC
CTCCCATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_i19.b1 MSMg01no188_i19.b1 CHROMAT_FILE:
MSMg01no188_i19.b1 PHD_FILE: MSMg01no188_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:14 2005
         (311 letters)



>mm_chr19_36291470_36292180
          Length = 711

 Score =  555 bits (287), Expect = e-162
 Identities = 302/307 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttaatgagaatactgagatagcaaccataataggtcactcaaacagcagagtgc 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaatgagaaaactgagatagcaaccataataggtcactcaaacagcagagtgc 264

                                                                       
Query: 65  agatctaggtcctggggtctctcagtcccgagatatccaaggtgggacctacccaccgcc 124
           ||| ||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 265 agaactaagtcctggggtctctcattccccagatatccaaggtgggacctacccaccgcc 324

                                                                       
Query: 125 tacgctccactctgtgccagtctccttccgaccaaagctggagactggcaagtgtcaaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tacgctccactctgtgccagtctccttccgaccaaagctggagactggcaagtgtcaaca 384

                                                                       
Query: 185 tgcctgcccccagcccacacctccttacccatgccactagcaatctagcctacatttgtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgcctgcccccagcccacacctccttacccatgccactagcaatctagcctacatttgtg 444

                                                                       
Query: 245 cacattcctacagagacaatttccatagcaacagcaaaaccatatcaaaaaaggcacctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacattcctacagagacaatttccatagcaacagcaaaaccatatcaaaaaaggcacctg 504

                  
Query: 305 agctatg 311
           |||||||
Sbjct: 505 agctatg 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)