BAC Information

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BAC

Clone NameMSMg01-189F13
Chromosome19 (Build37)
Map Location 52,747,188 - 52,747,495
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042928, LOC668536, LOC100042936, Ins1
Downstream geneLOC100043450, Xpnpep1, LOC668545, LOC674277, Add3, 1700001K23Rik, Mxi1, Smndc1, Dusp5, LOC100043462, Smc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189F13.T7 (MSMg01no189_f13.b1)MSMg01-189F13.TJ (MSMg01no189_f13.g1)
ACCAG380064AG380065
length742750
length of high quality
(start - end)
312 (46 - 357)291 (76 - 366)
definitionCHROMAT_FILE: MSMg01no189_f13.b1 PHD_FILE: MSMg01no189_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:18 2005CHROMAT_FILE: MSMg01no189_f13.g1 PHD_FILE: MSMg01no189_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTACTGTAAGCAGTACAATGCACTTTGTCTTTAGTGGGGTCAGCAT
AATTAATAGGGAGAAAATGAGACTGGATGATAGATGTTTGGGAGGAATGA
ACCACAATGGACACCTCCGGAAGATGCCAGGTATTATAAATTTGAGATTC
ATAAACTATCATATTTTTATCATATTTTTCTATGACAGTTTTCTAAATTG
TATATTCTTGAGAATGAGATAATCTTAAGAAAATTTTAGTGTGAGATAAT
ACTCTATTCTAATTAACACTTAAAACCAAGTAACTGATTTCAACACTCAT
TTTTCATTTGTATGTATCCCCGCCCACACTGACCATACTGGGCTGGGTCC
TCAGCTTAGGATCTGTTCACAGAAATTCATGCAAAGTGTTCAACATGGCT
GGCTTCCATCGGAGCCTTGACTAAACAAAGGTCTGCTTTCAAAAGCTTTC
AGTGTGTTGCTACAGTGAATGACTCAGGAATCCGGGAATTCAGGAATTCC
GTTCAAGCTTGCTTCTTCAAGGCTACAAACCGAGACGTATCAGAAGGGCC
GGAGAAGACAGATAGATTTCCAACCTCATCTTATTCAGCATGCTAGTATG
TACCTGCATAGGGACTTTCGCTCCCCTTTGATTACCCGTGCCTCGAATCT
TGACCCTCATTTTACTACCACATTCCTATTCTTTTACACTTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATATTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCAGAATACTGGATATAGTACTACCGGAGGATCC
AGCAATACCTCTCTTGTTCATATATCCAGAAGATGCCCCAACTGGTAAGA
AGGACACATGCTCCACTATGTTCATAGAAGACTTATTTATAATAGCCAGA
AGCTGGAAGGAATCCAGATGCCCCTCAATAGAGGAATGGATACAGAACAT
GTGGTACATCTACCCAATGTAGTACTACTCAGCTATTATAAAGAATGAAT
TTATGAAATTCCTAGTCAATTGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGCAATACATTCAATAAGGAACTCTCCCTTTATGTACTCACTGATAAT
TGGATATTATTCCAAATTCTAGTATATCTTACACCTAAGATACAACTTTT
TTAATCACTTGAAACCTCAAGAATAATGAAAATTTGTTTTGTGTACTCTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_f13.b1 MSMg01no189_f13.b1 CHROMAT_FILE:
MSMg01no189_f13.b1 PHD_FILE: MSMg01no189_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:18 2005
         (312 letters)



>mm_chr19_52746984_52747696
          Length = 713

 Score =  518 bits (268), Expect = e-151
 Identities = 298/308 (96%), Gaps = 1/308 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctactgtaagcagtacaatgcactttgtctttagtggggtcagcataattaatag 64
           |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 205 gaattctattgtaagcagtacaatgcactttgcctttagtggggtcagcataattaatag 264

                                                                       
Query: 65  ggagaaaatgagactggatgatagatgtttgggaggaatgaaccacaatggacacctccg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggagaaaatgagactggatgatagatgtttgggaggaatgaaccacaatggacacctccg 324

                                                                       
Query: 125 gaagatgccaggtattataaatttgagattcataaactatcatat-ttttatcatatttt 183
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 gaagatgccaggtattataaatttgagattcataaactatcatatcttttatcatatttt 384

                                                                       
Query: 184 tctatgacagttttctaaattgtatattcttgagaatgagataatcttaagaaaatttta 243
           |||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||| |
Sbjct: 385 tctatgacagttttctaaattgtagattcttgagaatgagatagtcttaataaaatttca 444

                                                                       
Query: 244 gtgtgagataatactctattctaattaacacttaaaaccaagtaactgatttcaacactc 303
           ||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 445 gtgtgagataaaactctattctaattaacacaaaaaaccaagtaactgatttcaacactc 504

                   
Query: 304 atttttca 311
           ||||||||
Sbjct: 505 atttttca 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 713
Length adjustment: 9
Effective length of query: 303
Effective length of database: 704
Effective search space:   213312
Effective search space used:   213312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)