Query= MSMg01no192_a15.b1 MSMg01no192_a15.b1 CHROMAT_FILE:
MSMg01no192_a15.b1 PHD_FILE: MSMg01no192_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:53 2005
(300 letters)
>mm_chr19_38009901_38010601
Length = 701
Score = 501 bits (259), Expect = e-146
Identities = 281/295 (95%), Gaps = 12/295 (4%)
Strand = Plus / Plus
Query: 16 gaattcccccc-aaagaaagaaatccctgagatctgcttcttattgctttgttaagatgt 74
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattccccccaaaagaaagaaatccctgagatctgcttcttattgctttgttaagatgt 275
Query: 75 ctactttctatgactatttatttccattgggggagggtgtgagccgattttataggaagt 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ctactttctatgactatttatttccattgggggagggtgtgagccgattttataggaagt 335
Query: 135 tagagacagcaagaaagcctgcagcacaatgcatgctctacactaatggtccttgacaca 194
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 336 tagagacagcaagaaagcatgcagcacaatgcatgccctacactaatggtccttgacaca 395
Query: 195 ccctttggcttggtcaa-----------agagaatacatacctcaatggcagtgagctga 243
||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 396 ccctttggcttggtcaagtaaaactcagagagaatacatacctcaatggcagtgagctga 455
Query: 244 accacaggcctgatcccctgagggaccatgtataagtttggtgctctttgagagg 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 accacaggcctgatcccctgagggaccatgtataagtttggtgctctttgagagg 510
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 701
Length adjustment: 9
Effective length of query: 291
Effective length of database: 692
Effective search space: 201372
Effective search space used: 201372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no192_a15.g1 MSMg01no192_a15.g1 CHROMAT_FILE:
MSMg01no192_a15.g1 PHD_FILE: MSMg01no192_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:54 2005
(180 letters)
>mm_chr19_38159303_38159882
Length = 580
Score = 269 bits (139), Expect = 8e-77
Identities = 145/147 (98%)
Strand = Plus / Minus
Query: 2 tctgtgaagtgcactggcctaggattttgaaaaccaaaatcccagttctttgcccatcca 61
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 308 tctgtgaagtgcactggcctaggattctgaaaaccaaaatcccagtcctttgcccatcca 249
Query: 62 cagaaatggggtgggtttgacttttggggagaaaaaatctccctatgctctctctctctc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 cagaaatggggtgggtttgacttttggggagaaaaaatctccctatgctctctctctctc 189
Query: 122 tctctctctctctctctctctctctct 148
|||||||||||||||||||||||||||
Sbjct: 188 tctctctctctctctctctctctctct 162
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 580
Length adjustment: 8
Effective length of query: 172
Effective length of database: 572
Effective search space: 98384
Effective search space used: 98384
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
