BAC Information

Click to search

BAC

Clone NameMSMg01-192M18
Chromosome19 (Build37)
Map Location 26,714,090 - 26,714,495
singlet/doubletsinglet
Overlap geneSmarca2
Upstream geneDmrt2, EG667806, 1700048O14Rik, LOC100041846, LOC100041857
Downstream geneGm815, LOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192M18.T7 (MSMg01no192_m18.b1)MSMg01-192M18.TJ (MSMg01no192_m18.g1)
ACCAG382353AG382354
length1,2441,248
length of high quality
(start - end)
423 (31 - 453)213 (71 - 283)
definitionCHROMAT_FILE: MSMg01no192_m18.b1 PHD_FILE: MSMg01no192_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:10:40 2005CHROMAT_FILE: MSMg01no192_m18.g1 PHD_FILE: MSMg01no192_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:10:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGGACACTGGGCGCTATAGACTCACTAAGGGAGAGGATCCGCGGAATT
CTACATATTCAGATGCAATGGGTGTGACCCCAAGGTCTCACTTTGCAAAC
TGCTGATAAGTTCCTGTAAAACAGGCCTCTGTCCCAACCGCTGAGGCTGG
CTATGGGATCCAGTGCCTAGGGCTAAAATAGCTAACTGGGAACTAAAAGA
GGTTCATCCTGCCCTTAGCAGTTCTGAAAGCTTATTTCAGGCTTAGTTAT
ACTGAATCCAAGGAAGTAAATCTTACTTTAATTACATTATTAAAGTATTT
CTAAAACTACTCAACATTAGGGGTAAAATATGCTCATTTCCCCTAACAAA
AATTAGCAAATATTAAGATTCAAGGAAGTCTTTTTTTTTTCTTCTTATCA
TCAGAGGAGGGCATGCAATCTTTAACCTGTCTCTGAAGCTTGGCATGGCA
TTTTATACCTGCCCCCCCAGCACTTCAGAAGTAGAGGCAAGAGATGAATT
CAAGAGTTGGTGACCAACCTGGGCTGTAGGAGACCCTGTCCCTAAGCAAC
AGAATAAATCTTTAAATATTGCTGAATTCAGTTTCAGCCATTTTTCTGCA
TTAAGTTTTAGGAATTTCAATTAACTGCCGGATACAAATGTAAAATAAGA
AGGGCTTCAATTCTTCCCCAGGTGAGTTCTCAGTTTCCTTAAAACTGAAT
ACAATTAGTGAAGGTACCAGATGCATTAGTGCACTTAAAAAAATAAAATA
AATGAGGACTCTCACTCAGCAGATGCTAAAGCTACAAGCAGAATTCATCC
AAGTATTTCTTATGTCCTTCCTTAGGAAAAAAAAAATAATACAGCCATTA
AACCCAAAACTCATAGTCCCAAACTTCCGAGAGGCACAATAATTTACCCC
CCAAAGGGCTGCAGTGTGTAAAAAGAAAAACATTTTCTTCCACTTCTGAC
AAAAGCTCTTTTNAGGAATTTTGTGGANAATCCTGGAAAACCCTAATCAA
AACCCCGGCGGGGGGGAAGGGAAGGATCTTTCCAAGGGCTTGTGGAACCT
TCCCCCGGGGGGTTTGTGGTGTTTTCTTTCTCTTCCAATCCCACCCCTCT
CCTTACTTATCTTATCTTCTCTTAATTTTTTTCTCTTTCTCCACTTTACT
TCTATATCACACACTCTACCCTCATATTATTTATATCTACTTCTTAGCTC
CACTGACCTCTCTNTCTATCTTATTCCTTTTTGTTACTCTATTT
NNNTTAACCTAGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAACTCTTGAAAACCACATGTCAAAAGGAAA
GAGCTCACTCTAAAAAGGTGTCCTGTGTCCTCCCTTTAGGACACACACAC
ACAAATAACCATAGATAGATAGAAAGATAGATAGATAGATAGATAGATAG
ATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT
AGATAGATGTTTTTAATGTGCCTTCTTTACTAAAACATTCAAACGTCAAA
GACTGGGACCCATGACGGTTACACTGATGTTTTAGAAGTACGTTAACTTC
TAATTAAACTTTGGAATATCTGTCATGGCATTTTGAAAAGGCGAAATTTG
TTTTTCTCTTTTATAAATTTTCAACTTGATTTTTTTATGGATTANTTGTG
TTTTTTTTTCCCCCCCCCCCANAAANAANNACTTCCCAAAAAAAAAAGGG
GGGGTNTCTTTCTTGTGTTTCCTTCCCTCGATTTAATAGAAGGATGTGTT
TGAGGATTTATATTATTACTTTTCTGTTATTTTTTTTTTTCCTCTTTACT
TTTATATTTTCTTTTATTTATTTTTTTTTTTTATTCTTTCTTTTATTCTC
TTTACTCTATTTTTTCTTTCTTTACTCTTCTTTTTCATTTTCTCTTTCTT
TATACTTTTCTCTTTTCTTGTTTATTCTCTCTTTTATTTTCTCTCTCTTT
CAATATCTCTCTCTTTTCTTTCTCCTTTCTCTTTTTTTTTCTTTTTTTTT
ATTTCCCCCTTTTCTCTTTTATTCTTTCTTTCTTTTCTTTTTATTTCTTT
CCTTCATTCTTTTTATTACTTTTTTTTTCTCTTTCTTATTGCTCTTTCAT
GGCGACATTCTTATCCTTTCTATACTTTTCTATTCTTTTTCTTTCCTTCT
ATCTTCTTTTTTCTTTCTCTTCCCCCTTTTTTTTTTTCTGTCCTTACTTC
TACTCTTATTTTTTTCTCTTTATATTTTCTTATTTCTTTCCATATATTTT
TTCTCTATATTTTTCCTTTTTTACTATATTCTTTTATGATCTCTACTATT
TACTTTTTCTCTTCATTTACATCCTATTTTTTATTTTTCCCTTTTTATTC
TATAATTTTCTATCTTCTACTACAGTCTCTCTATTAATTTCTTTTCTTTC
TTCATTCTCTCTCCCTCTTCTTTTTAATATATTTTATCTTTATTCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_m18.b1 MSMg01no192_m18.b1 CHROMAT_FILE:
MSMg01no192_m18.b1 PHD_FILE: MSMg01no192_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:10:40 2005
         (423 letters)



>mm_chr19_26713875_26714699
          Length = 825

 Score =  739 bits (382), Expect = 0.0
 Identities = 400/406 (98%), Gaps = 2/406 (0%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaattctac-atattcagatgcaatgggtgtgaccccaaggtctcactttgcaaactgct 74
           ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 gaattctacaatattcagatgcaatgggtgtggccccaaggtctcactttgcaaactgct 562

                                                                       
Query: 75  gataagttcctgtaaaacaggcctctgtcccaaccgctgaggctggctatgggatccagt 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gataagttcctgtaaaacaggcctctgtcccaaccgctgaggctggctatgggatccagt 502

                                                                       
Query: 135 gcctagggctaaaatagctaactgggaactaaaagaggttcatcctgcccttagcagttc 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcctagggctaaaatagctaactgggaactaaaagaggttcatcctgcccttagcagttc 442

                                                                       
Query: 195 tgaaagcttatttcaggcttagttatactgaatccaaggaagtaaatcttactttaatta 254
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaaagcttacttcaggcttagttatactgaatccaaggaagtaaatcttactttaatta 382

                                                                       
Query: 255 cattattaaagtatttctaaaactactcaacattaggggtaaaatatgctcatttcccct 314
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 cattattaaagtatttctaaaactactcaacattaggggtaaaatatgcttatttcccct 322

                                                                       
Query: 315 aacaaaaattagcaaatattaagattcaaggaagtctttttttttt-cttcttatcatca 373
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 aacaaaaattagcaaatattaagattcaaggaagtcttttttttttccttcttatcatca 262

                                                         
Query: 374 gaggagggcatgcaatctttaacctgtctctgaagcttggcatggc 419
           || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacgagggcatgcaatctttaacctgtctctgaagcttggcatggc 216


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 825
Length adjustment: 9
Effective length of query: 414
Effective length of database: 816
Effective search space:   337824
Effective search space used:   337824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)