CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGTTCTAGAACAGATGTCCTCCTCTGAGGGTCTCCACAGGCAAGA
GGCATGAGTATTGTGCACAGACATACACGTATTCAACACATCTGTGCACA
CAAAATTTAAAAAAAAAGTGATAAGAGATAAGCATGTTAAAGTCTTGGTA
GGTGAACCTGTGTGGTAAGTATATGAAATGTTTGTTATGGTCTTTACCTT
AAAGGAAACCATTTTCATAATAGAAACTATGTTAATACTTGTGTTGATGC
AATGTGTTAAAAAAATTGAAAACAGAAAAACAACTTCTACATTCCAAGAG
ACTGGAACTCATAACCAGAGTTAATAACACACCTTGAGGTCATGTGAACT
CAGTCTGTTTCTTTAACCTACTTTTTGTTTGTTTTGTTTTGTTTTGTTTT
TTGAGACAGGGTTTCTCTGTATAGCCCTAGCTGTTCTGTAACTCTCTCTG
TAGATCAGACTGGCCTTGAACTCAGAAATCCACCTTCCTCTGCCTCCCAA
GTTCTGGGATTAAAGGTGGCACCACTGCCTATTTTTAAGAGAACAATGTA
ACAATCAACCTACTTGCTTTGAATTTCCCCAGGGAGCAACTTTTACAACC
TAAGTTAATGGAGAGCTGTAGTCTTAAATGTTGTACTCTTCCCAGGCCAG
TGACCG

NAAAANAAAACGATGAGAATGCTGTTCNNCCCNNTTTCTTNCNNCNTCTT
TTTTCNNCTTTNCTCAAGAGATATTATCCTCCTCTGCTTCTTCTCTTTTT
CTTTCTTTTTTCTTATCCTCCTCTCTNCNACAANTTTTTCTTCTCCNNNN
NNNNNNNNCCCTCGCACAATTNGCCCTAAGATGGGCGGTNGAGAGGCCCT
TGGGGCGCGGGCTCCCGCCCCTTGGGNCCCGCCTTCGCAAACAATTTTTA
AAGGCTTGGGACAACCTAATTATAAAAAAAATGGAATTCCCCGCCGGCGG
AAAAATTTTTCTCTTCCCCCACGGGGGAGAAATAATAAAGGTAACAAAGA
GGGGAAAAAGGTGGGGGTCTCCAACACCACCCCCAAGGAGGGCGCCCTCC
TCTTTTTCCCCAGGAGGGAAAAAATTTGTGGGAAATTGTGGTAGGTTTTG
TAAGAGGGCCCCCCTTTAATAAAAAAACAAGTTTATTTTGTATAATTCCC
CCCTGCGGGGGGAAGAAAAAAAAAAAAAGAGAAAGAGTGTTTTTTTATAA
CAAATTATTTTTTTTTTAAAAAAAAAACGGGGGCGCCGCGGGGTGCTTGT
TTTCCTACACACACAAAAAGTGTCTATTAGTGAAACACCCACCCCCCTTT
TTCTTTCTTGTTTCTTTAAAAAAAATACAATATATATTGTGTTCTCTCCA
CCCTCCTCCATCCCCCACTAAAAAAAACACTTCTCTCTGTCGTAGGGTGG
GCCGGAGAGGAGGACGCATCACTAACAATATATACATTCTCTCCCATCTC
TCATCCCCCCGCCGGCGGTGCAGAGACTCGTATAAATACAATATATATAT
ATTTTTGTGTGTCATTCTAATTACATTACAAATAACCTCCTCCCCTTTTT
TCCCTCATCCCCGCGCTCTCTGCNCAAATAAATAAANCAAATAAATATAT
TTTTGTTATTTTTGTTTCCCTCCTCCCCACCACCCCACACTACTCAAACC
ATCGACATTCTTCTCTCTCCATTTCTTATATTATATAGAAGAAAAGGAAG
TTATAAATATTTTCTATCTTCTTTCCTCCCCTCTCTCTATATTTGCCCGA
TTTATTATATTGTTTCCTCTTTCCACAACACAACAAAAATCTCTTTCTCC
GTATAGTATATTATTCATCTCTTTTGCCCCCTCTCTCATTTTTATTATTT
AN

Query= MSMg01no194_j01.b1 MSMg01no194_j01.b1 CHROMAT_FILE:
MSMg01no194_j01.b1 PHD_FILE: MSMg01no194_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:28 2005
         (653 letters)



>mm_chr19_31068274_31069327
          Length = 1054

 Score = 1149 bits (594), Expect = 0.0
 Identities = 641/666 (96%), Gaps = 16/666 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccagttctagaacagatgtcctcctctgagggtctccacaggcaagaggcatga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 204 ggaattccagttctagaacagatgtcctcctctgagggtctccacaggcgagaggcatga 263

                                                                       
Query: 64  gtattgtgcacagacatacacgtattcaacacatctgtgcacacaaaatttaaaaaaaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 264 gtattgtgcacagacatacacgtattcaacacatctgtgcacacaaaattttaaaaaaaa 323

                                                                       
Query: 124 gtgataagagataagcatgttaaagtcttggtaggtgaacctgtgtggtaagtatatgaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 324 gtgataagagataagcatgttaaagtcttggtaggtgaacctgtgtgttaagtatattaa 383

                                                                       
Query: 184 atgtttgttatggtctttaccttaaaggaaaccattttcataatagaaactatgttaata 243
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 384 atgtttgttatggtctttaccttaatggaaaccattttcataatagaaactatgttaata 443

                                                                       
Query: 244 cttgtgttgatgcaatgtgtt-aaaaaaattgaaaacagaaaaacaacttctacattcca 302
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cttgtgttgatgcaatgtgttaaaaaaaattgaaaacagaaaaacaacttctacattcca 503

                                                                       
Query: 303 agagactggaactcataaccagagttaataacacaccttgaggtcatgtgaactcagtct 362
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agagactggagctcataaccagagttaataacacaccttgaggtcatgtgaactcagtct 563

                                                                       
Query: 363 gtttctttaacctactttttg---------------tttgttttgttttgttttgttttt 407
           |||||||||||||||||||||               ||||||||||||||||||||||||
Sbjct: 564 gtttctttaacctactttttgtttgttttgttttattttgttttgttttgttttgttttt 623

                                                                       
Query: 408 tgagacagggtttctctgtatagccctagctgttctgtaactctctctgtagatcagact 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgagacagggtttctctgtatagccctagctgttctgtaactctctctgtagatcagact 683

                                                                       
Query: 468 ggccttgaactcagaaatccaccttcctctgcctcccaagttctgggattaaaggtggca 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 684 ggccttgaactcagaaatccaccttcctctgcctcccaagttctgggattaaaggtgtca 743

                                                                       
Query: 528 ccactgcctatttttaagagaacaatgtaacaatcaacctacttgctttgaatttcccca 587
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ccactgcctatttttaagagaacaatgtaacaatcaacctacttgctttgaatttcccca 803

                                                                       
Query: 588 gggagcaacttttacaacctaagttaatggagagctgtagtcttaaatgttgtactcttc 647
           | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 804 gtgagcaacttttacaacctaagttaatggagagctgtagtcttaaacgttgtactcttc 863

                 
Query: 648 ccaggc 653
           ||||||
Sbjct: 864 ccaggc 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1054
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1044
Effective search space:   671292
Effective search space used:   671292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)