CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGAAGTTCCACTTTGGAAATAAATTTGGCTTTCTCTTCAAATA
GGAGCAAAAGAAGACAGCCAGGTGAGCTTATTTTGATGCAGCCAGACAGC
TGAACTTTCAATTAGAATATGACATGGGACATTTCAGTCTGTGACTCCAA
ACATTCCCTGTATTACTGGCATCAACTTGTTGCTCAGGGAGATGGAGAAA
AATATAGAGAATGACTTAAGGATAAAGCCTGGACTGAAGATCCAAGGTAT
ACTTGTGCTACTGAGCTCAAGTCGATAGACATACTGATGGGGATTTGGCA
CTAAAGCTAGAGCTCTGAGTGTGAGGAAACTGAGATTTCCTTTATAGACT
AAGGAGACTATTAAAATAAACCCTTAAGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTATGTGTGTGTGNNNNNNNNNNNNNNNNNTNNNNNTNNNNNNTN
NNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTNTTTNTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTNTTTTT
NNTNTTNNTNTTTTTTTTTTNTTTTTTTTTNTTTNTTTTTTNNNTTTNNT
NTTTTNTTTTTTNTTTTTTTTCCTTCTTTTCTCTTCTTTTTCCCTTCCCC
TCTTTCTCTTCTCCCTCTTTCTC

GAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGT
GGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCT
AAACACATGAAACTCAAGAAGAATGAAGA

Query= MSMg01no195_a08.b1 MSMg01no195_a08.b1 CHROMAT_FILE:
MSMg01no195_a08.b1 PHD_FILE: MSMg01no195_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:05 2005
         (425 letters)



>mm_chr19_49389474_49390298
          Length = 825

 Score =  717 bits (371), Expect = 0.0
 Identities = 403/419 (96%), Gaps = 9/419 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctgaagttccactttggaaataaatttggctttctcttcaaataggagcaaaa 63
           |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 555 ggaattcctgaagttcaactttggaaataaatttggcattctcttcaaataggagcaaaa 496

                                                                       
Query: 64  gaagacagccaggtgagcttattttgatgcagccagacagctgaactttcaattagaata 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gaagacagccaggtgagcttattttgatgcagccagacagctgaactttcaattagaata 436

                                                                       
Query: 124 tgacatgggacatttcagtctgtgactccaaacattccctgtattactggcatcaacttg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 435 tgacatgggacatttcagtctgtgactccaaacattccctgtattactggcatcaccttg 376

                                                                       
Query: 184 ttgctcagggagatggagaaaaatatagagaatgacttaaggataaagcctggactgaag 243
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 375 ttgctcagggagatggagaaaaatatagagaatgacttaaggatgaagcctggactgaag 316

                                                                       
Query: 244 atccaaggtatacttgtgctactgagctcaagtcgatagacatactgatggggatttggc 303
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 315 atccaaggtatacttgtgctactgagctcaagtcgataggcatactgatggggatttggc 256

                                                                       
Query: 304 actaaagctagagctctgagtgtgaggaaactgagatttcctttatagactaaggagact 363
           ||||||||||||||||||||||||||||||||||||||||||||||         |||||
Sbjct: 255 actaaagctagagctctgagtgtgaggaaactgagatttcctttat---------agact 205

                                                                      
Query: 364 attaaaataaacccttaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtg 422
           ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 204 attaaaataaacccttaagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 146


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)