Query= MSMg01no202_l21.b1 MSMg01no202_l21.b1 CHROMAT_FILE:
MSMg01no202_l21.b1 PHD_FILE: MSMg01no202_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:40 2005
(279 letters)
>mm_chr19_38229520_38230197
Length = 678
Score = 505 bits (261), Expect = e-147
Identities = 273/277 (98%), Gaps = 1/277 (0%)
Strand = Plus / Minus
Query: 1 ccactgctcagtgcaacatgatcacaagcaagctctggttgcaggaagggaggtacaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ccactgctcagtgcaacatgatcacaagcaagctctggttgcaggaagggaggtacaaga 417
Query: 61 aacaacaggaccatatggtgtttgtgtgtttccacatcagtaagcaaagggataggtggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 aacaacaggaccatatggtgtttgtgtgtttccacatcagtaagcaaagggataggtggg 357
Query: 121 cagagccaggggaagcctccactaatccacacagctgtgtctgggtttccccaaggcagg 180
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 356 cagagccaggggaagcctccactaatccaaacagctgtgcctgggtttccccaaggcagg 297
Query: 181 gtttagttgctgctggggcgggatcacccacaccccgaggaaggtcccttccatttaagc 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 296 gtttagttgctgctggggcgggatcacccacaccctgaggaaggtcccttccatttaagc 237
Query: 241 attgatgggattctgtgtgtctaaacagcacagagaa 277
|||||||||||||||||||||| ||||||||||||||
Sbjct: 236 attgatgggattctgtgtgtct-aacagcacagagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 678
Length adjustment: 9
Effective length of query: 270
Effective length of database: 669
Effective search space: 180630
Effective search space used: 180630
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no202_l21.g1 MSMg01no202_l21.g1 CHROMAT_FILE:
MSMg01no202_l21.g1 PHD_FILE: MSMg01no202_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:40 2005
(203 letters)
>mm_chr19_38164757_38165358
Length = 602
Score = 348 bits (180), Expect = e-100
Identities = 196/202 (97%), Gaps = 3/202 (1%)
Strand = Plus / Plus
Query: 1 agtttttctcccgtgaactcctttcacagtggtcctaagtagccacagagtggtccctgc 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtttttttcccgtgaactcctttcacagtggtcctaagtagccacagagtggtccctgc 260
Query: 61 ccttggaggtgagcttgaggacaagtgagagactttgttttccccaactacagattttta 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctcggaggtgagcttgaggacaagtgagagactttgttttccccaactacagattttta 320
Query: 121 atttcagtatt-ctatggnncaacctaggtatggtttactcatagctaatgcttgtcatg 179
||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttcagtatttctattg--caacctaggtatggtttactcatagctaatgcttgtcatg 378
Query: 180 ccagcactgtatgcggaggata 201
||||||||||||||||||||||
Sbjct: 379 ccagcactgtatgcggaggata 400
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 602
Length adjustment: 8
Effective length of query: 195
Effective length of database: 594
Effective search space: 115830
Effective search space used: 115830
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
