BAC Information

Click to search

BAC

Clone NameMSMg01-203D06
Chromosome19 (Build37)
Map Location 28,320,696 - 28,449,950
singlet/doubletdoublet
Overlap geneGlis3
Upstream geneVldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868, LOC100042612, Rfx3, LOC666997, LOC433235
Downstream geneEG434460, EG627788, Slc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203D06.T7 (MSMg01no203_d06.b1)MSMg01-203D06.TJ (MSMg01no203_d06.g1)
ACCAG388064AG388065
length719772
length of high quality
(start - end)
322 (20 - 341)283 (133 - 415)
definitionCHROMAT_FILE: MSMg01no203_d06.b1 PHD_FILE: MSMg01no203_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:17 2005CHROMAT_FILE: MSMg01no203_d06.g1 PHD_FILE: MSMg01no203_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,320,696 - 28,321,012)(28,449,668 - 28,449,950)
sequence
ACTCCTATAGTTAGAGGATCCGCGGAATTCCTGAGATGTTAATAAGTGGG
AAAAGCAGTGGTGCATGGATAGTTATCTAGTCAGAAATATTTATAACGAA
TTCCAGGTAAGAGAAATGGGAAAATGCAAACGAATGCCATATTTGCTGCT
CTCACCCTGGACACTCAGCTCCATCCTGATGCTCCCCAGTACAACGGTCC
TCTGAAAATAATGCAGTGGAAGAGAAGCCATGCCAGGCATGAGCTGCTGC
ACTGTGTAGGCAGCCCTTGGGGAAACTCCACAGATAATGACTCAGGTCTG
AGTTCGTGCCTCTCCTAACAGCATAAAGTCAGCAAAATAATGACTCATGA
GCAAGTCTTCAACGATGGCTCCGCAACTCAGGTTTTGATGGCTGCCCCAC
TATCCAATCATATCATATGTGGTATGTGGTGATCTTAGATTCACAGGTCA
TCAAGATTCTGACTCTCTGAGTGTCCCCATTCACAAGGCTACCATAAAGC
CTTTAGGATACATTCCAGGCTTACAGACACCCTGAATTCTTCTTTCTCAT
TCACTGTGGGAAATGCTGTTAGCTAGGATACTAAGTGCTTAGGGGTGGGT
AGATTCTGGCTGACTACCTGGGCCCAGTTAGGTGCCACAGAACCCTTTGT
GGTTTTAAGTCCAGACGAAAAATATGCCTACTTATAACTACGGCTTTATC
TACATCTCCGTGCATGTTT
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGGTATTGTGTTTTTCTCCCAGTG
AAGAAGGAATGTAATGGAACTTTGTTGGCACTCTCTCCTTTTTTCCTGTG
ATTGATGGTGGCATTACCTGACTCTCACTCTACATCCCCTCCACCGAATA
GCCTCCTGGTTCCCTTTCCAGGACATAGCTGCTCCTCTCAGCCCCGAGTG
CCTTCTCTGTCCACCTAGATGTTCCCTCTGGATCCTGGTTTCTCTTGCTG
CTTCAGAGCTTGCGTGTGCCAGGTGGGTTCTTCAGAGTGTTCACATCCCT
CTTCTATTTATTCCTTTCACTCACTGGCATGTTCCCTGTGCACCATTGTC
TGAAATGTCCTGAATTTTGCCCCCCCCTCCAAGTTGTCAAAGGCATGGTT
TGAACTGAACAATCCAAAAGAATGGAACAGCTTCAGCCCCTTTCTTCTTT
ATTCTCATTACCTATCCCGGCAGGGAGGACGGTAAAGAATACTTCCTCTA
GACTCCGAAAGAATGTCTAATATTCGTCATTTCTCCATAACATTACACAG
CTTAATCCTTGCTTTAGAAATTCTTCTTTTCTCTCTATTTATCCCCTCAA
AATCATCTTGGTTCTAATCGGTCTTATTTCTTGATATATTTATCCCTTAC
CATATTTCAATATATTTTTACCCACCTTGTATTTGGCTTATTCAATGCCG
CCTTTAATTTTTTCTTTTGTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_d06.b1 MSMg01no203_d06.b1 CHROMAT_FILE:
MSMg01no203_d06.b1 PHD_FILE: MSMg01no203_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:17 2005
         (322 letters)



>mm_chr19_28320492_28321213
          Length = 722

 Score =  605 bits (313), Expect = e-178
 Identities = 316/317 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattcctgagatgttaataagtgggaaaagcagtggtgcatggatagttatctagtca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcctgagatgttaataagtgggaaaagcagtggtgcatggatagttatctagtca 264

                                                                       
Query: 65  gaaatatttataacgaattccaggtaagagaaatgggaaaatgcaaacgaatgccatatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaaatatttataacgaattccaggtaagagaaatgggaaaatgcaaacgaatgccatatt 324

                                                                       
Query: 125 tgctgctctcaccctggacactcagctccatcctgatgctccccagtacaacggtcctct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgctgctctcaccctggacactcagctccatcctgatgctccccagtacaacggtcctct 384

                                                                       
Query: 185 gaaaataatgcagtggaagagaagccatgccaggcatgagctgctgcactgtgtaggcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaaataatgcagtggaagagaagccatgccaggcatgagctgctgcactgtgtaggcag 444

                                                                       
Query: 245 cccttggggaaactccacagataatgactcaggtctgagttcgtgcctctcctaacagca 304
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 445 cccttggggaaactccacagataatgactcaggtctgagttggtgcctctcctaacagca 504

                            
Query: 305 taaagtcagcaaaataa 321
           |||||||||||||||||
Sbjct: 505 taaagtcagcaaaataa 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no203_d06.g1 MSMg01no203_d06.g1 CHROMAT_FILE:
MSMg01no203_d06.g1 PHD_FILE: MSMg01no203_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:17 2005
         (283 letters)



>mm_chr19_28449468_28450150
          Length = 683

 Score =  547 bits (283), Expect = e-160
 Identities = 283/283 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctccttttttcctgtgattgatggtggcattacctgactctcactctacatcccctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ctctccttttttcctgtgattgatggtggcattacctgactctcactctacatcccctcc 424

                                                                       
Query: 61  accgaatagcctcctggttccctttccaggacatagctgctcctctcagccccgagtgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 accgaatagcctcctggttccctttccaggacatagctgctcctctcagccccgagtgcc 364

                                                                       
Query: 121 ttctctgtccacctagatgttccctctggatcctggtttctcttgctgcttcagagcttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ttctctgtccacctagatgttccctctggatcctggtttctcttgctgcttcagagcttg 304

                                                                       
Query: 181 cgtgtgccaggtgggttcttcagagtgttcacatccctcttctatttattcctttcactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 cgtgtgccaggtgggttcttcagagtgttcacatccctcttctatttattcctttcactc 244

                                                      
Query: 241 actggcatgttccctgtgcaccattgtctgaaatgtcctgaat 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 actggcatgttccctgtgcaccattgtctgaaatgtcctgaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)