BAC Information

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BAC

Clone NameMSMg01-203I18
Chromosome19 (Build37)
Map Location 43,806,630 - 43,806,914
singlet/doubletsinglet
Overlap geneEntpd7
Upstream gene4833409A17Rik, Hps1, LOC545291, EG627624, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28
Downstream geneCox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203I18.T7 (MSMg01no203_i18.b1)MSMg01-203I18.TJ (MSMg01no203_i18.g1)
ACCAG388275
length750805
length of high quality
(start - end)
---286 (76 - 361)
definitionCHROMAT_FILE: MSMg01no203_i18.b1 PHD_FILE: MSMg01no203_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:44 2005CHROMAT_FILE: MSMg01no203_i18.g1 PHD_FILE: MSMg01no203_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCATGTCATCTACTTTTCATTAG
GGCTGTGAGGTTGACATCTTAGGACTTCTCAGTTGTCTCCCTTCTCCATC
ATTCTAATTTTTATGTCCTGTGAGTGAGCCTCTGCTTTTTTTTTTTTAAT
GTTGCTATAAAATGCTCTTACCAGCCATTTGCTTCCTCAGGGAACATTTA
GCTTCATCTTGGTTTCTATATAGCTGTCTTGGTGTGTTGAGAGATCTAGT
CAGAAGTCCCTGGGCAGGTTAACAGTGGCCATGTTCATGGGCTCCAACTG
AGACTGGAGGATTTTTTTTTCTCCCCCCCCCCCCCTTNNNGNNTNTTNTN
TTGANGGTTTTTCCCCCCCCCCCTTTCACAAAAAAAAAACACCTGGGGCG
CTCTTGGCCCGCCCTTTCTTTATTCCCCCTTTTCCCTTTTTCCCTTTTTT
TTCTCTCCTTTTTCCCTTCCCTTTCCTTCTTCCTTCATCCTTTTTCCTTC
TTTTTTCCCCCATTTCTCTCCTTCCCTTTTTCTCCCCTTTTTTTACTTTC
CCCTCTCCTCCACTTCTCTTCCCTTTTCCTTTTTTCCTTTTACTCTTCCT
TTTTCCCCTCTCTTTTCTTTTTTCCGCCTATACACTTAACTTAATTACTT
CTCTTCCTTCATACCCTTCCCTTCCCTTCTTTCCTATTCCCTTCTCCCTA
TTTCTCCCCCCCACTTCTTCCCCCCTTCTCCTCCATTTGCCCTACTCTCC
CCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_i18.g1 MSMg01no203_i18.g1 CHROMAT_FILE:
MSMg01no203_i18.g1 PHD_FILE: MSMg01no203_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:44 2005
         (286 letters)



>mm_chr19_43806430_43807114
          Length = 685

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%), Gaps = 1/286 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcatgtcatctacttttcattagggctgtgaggttgacatcttaggacttctcagttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcatgtcatctacttttcattagggctgtgaggttgacatcttaggacttctcagttg 260

                                                                       
Query: 61  tctcccttctccatcattctaatttttatgtcctgtgagtgagcctctgctttttttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcccttctccatcattctaatttttatgtcctgtgagtgagcctctgctttttttttt 320

                                                                       
Query: 121 ttaatgttgctataaaatgctcttaccagccatttgcttcctcagggaacatttagcttc 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 t-aatgttgctataaaatgctcttaccagccatttgcttcctcagggaacatttagcttc 379

                                                                       
Query: 181 atcttggtttctatatagctgtcttggtgtgttgagagatctagtcagaagtccctgggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atcttggtttctatatagctgtcttggtgtgttgagagatctagtcagaagtccctgggc 439

                                                         
Query: 241 aggttaacagtggccatgttcatgggctccaactgagactggagga 286
           |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 440 aggttaacagtggccatgttcatgggctccaattgagactggagga 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 685
Length adjustment: 9
Effective length of query: 277
Effective length of database: 676
Effective search space:   187252
Effective search space used:   187252
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)