BAC Information

Click to search

BAC

Clone NameMSMg01-204B02
Chromosome19 (Build37)
Map Location 40,499,711 - 40,537,095
singlet/doubletdoublet
Overlap geneSorbs1
Upstream geneCyp2c38, Cyp2c39, C730004C24Rik, 9030012A22Rik, Cyp2c40, LOC100043108, LOC100042523, Cyp2c37, Cyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923, Pdlim1, LOC435599, A930028N01Rik
Downstream geneAldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk, LOC100043155, Dntt, Tmem10, Tll2, Tm9sf3, Pik3ap1, LOC100043167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-204B02.T7 (MSMg01no204_b02.b1)MSMg01-204B02.TJ (MSMg01no204_b02.g1)
ACCAG388591AG388592
length742758
length of high quality
(start - end)		320 (47 - 366)283 (78 - 360)
definitionCHROMAT_FILE: MSMg01no204_b02.b1 PHD_FILE: MSMg01no204_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:29 2005CHROMAT_FILE: MSMg01no204_b02.g1 PHD_FILE: MSMg01no204_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,499,711 - 40,500,023)(40,536,813 - 40,537,095)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCACAGACCAGAATTCTTGGATTTTTAGGAATTTCTATTAGCTTT
ATTCTCTCATTTAGGAGATGTCTTGAGCAAGTTGGTGGGGGATAGGAGTT
GTTTGACATTTAAGACCATTTAAAATTATGCCTGCCTTTCGAAAGAGCTG
AAGGTGTGGCAAGGTCGGGCCTTGGTGGAGCCTGGGGAGAGAGAGCTGGA
GTCTTCAGAACTTTGGGGCAAGGAACTGGCCCAGCTTCAAAGCAGCAAGG
CCAGGCTGGCTCCCCATGCACGCTGGGGTAGAGAGGGCAAAGACTGGCTC
TGTTCCTATCTGGTGCCTCAGCCCTGTCCGCCCCTCAAAGTTTCCTGCTG
CCTGAGAAAACATGTGCCCCCCCTCCATGAAAGGCCTGCTGTGTGGAAGC
ACCACGAAATAAAGGCTTACTCCAGAAACTCCCTGTGGACCTCCGCTTGT
CCGTCCACTGGCGATCACTCCCTCCCAACACAATTACTAGTCTTCCCTCA
TGTCCTCCCATGCCACATCTTGCGCACACCTCTTTCATATCCTCCCCCAT
CCCTCTCATCCTTGCCTATCCCCTCCTTCTTCCGCACTTATACCATTCCA
CCCTTTTATCTTATCTCCCCCCCTCTCTCCAACTGTTAACTGTATCTCTT
CCGCTCCCACCTTTCACTTCCTCCTTCAACTTTCTCCCCCCG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATTGTGTGTTACTCAGCTCTCC
TAGTTACTCTGCCTTCTAAGGACAACTGTCTCCCACTTAGCTCTGTTTCT
GGGCTTCCTCATATAGAGTCAGAGCAATGAGTAGAGGCTGAAATGGATGG
AGAGGGTCAGAGTTCCACGTGAATGTTGGTAAACAGTGGCTGTACTTGTT
TCTGGAAAGTTCAGTACTTGTGTGAGAGGAAAAGGCAGCCCCCACCAAAG
GAGGTAGAAGGGAGAGAAGAGGCTTTGAAGAGCAGACTGGGGTGGAGGTG
GGATGAAGAANAGAGNCNTTGGAGTAGCACAGGCCAGCAAAAGGTACAGA
GATGTGTGGAATACTTGCCTCCCCCCTTCCTGTTGCTCAAGAATTTTAAA
CTCTGACCATACGTAATGTCGCACTGTCTTTTAATCTCATGACTTATAAT
TTTTTAGCTATCATTTTCTGTTTATCTCTCATTCAGCCTGCATCTTCCTC
TTTTCCATCTTCTACTATTCATTAGGTTAATATGAATACCCTTTTACACT
GTCTTTTTCCCTTTCACCCTTACCACTCTCCTTTTATGGCTATTTCTTTA
TTTGCATGTGTGCTATTTTTATCGTGTGCTTTACCCTTTTTCTCTATCTA
CTTTTAATACCTCCCACCTATCCTCCCAGCCACTTCCCTCATTTTTTCAT
TTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no204_b02.b1 MSMg01no204_b02.b1 CHROMAT_FILE:
MSMg01no204_b02.b1 PHD_FILE: MSMg01no204_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:29 2005
         (320 letters)



>mm_chr19_40499507_40500226
          Length = 720

 Score =  598 bits (309), Expect = e-175
 Identities = 312/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacagaccagaattcttggatttttaggaatttctattagctttattctctcat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacagaccagaattcttggatttttaggaatttctattagctttattctctcat 264

                                                                       
Query: 65  ttaggagatgtcttgagcaagttggtgggggataggagttgtttgacatttaagaccatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttaggagatgtcttgagcaagttggtgggggataggagttgtttgacatttaagaccatt 324

                                                                       
Query: 125 taaaattatgcctgcctttcgaaagagctgaaggtgtggcaaggtcgggccttggtggag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taaaattatgcctgcctttcgaaagagctgaaggtgtggcaaggtcgggccttggtggag 384

                                                                       
Query: 185 cctggggagagagagctggagtcttcagaactttggggcaaggaactggcccagcttcaa 244
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 385 cctggggagagagagctggagtcttcagcactttggggcaaggaactggcccagcttcaa 444

                                                                       
Query: 245 agcagcaaggccaggctggctccccatgcacgctggggtagagagggcaaagactggctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agcagcaaggccaggctggctccccatgcacgctggggtagagagggcaaagactggctc 504

                        
Query: 305 tgttcctatctgg 317
           |||||||||||||
Sbjct: 505 tgttcctatctgg 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no204_b02.g1 MSMg01no204_b02.g1 CHROMAT_FILE:
MSMg01no204_b02.g1 PHD_FILE: MSMg01no204_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:29 2005
         (283 letters)



>mm_chr19_40536613_40537295
          Length = 683

 Score =  540 bits (279), Expect = e-158
 Identities = 282/283 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattgtgtgttactcagctctcctagttactctgccttctaaggacaactgtctcccact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 cattgtgtgttactcagctctcctagttactctgccttctaaggacaactgtctcccact 424

                                                                       
Query: 61  tagctctgtttctgggcttcctcatatagagtcagagcaatgagtagaggctgaaatgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tagctctgtttctgggcttcctcatatagagtcagagcaatgagtagaggctgaaatgga 364

                                                                       
Query: 121 tggagagggtcagagttccacgtgaatgttggtaaacagtggctgtacttgtttctggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tggagagggtcagagttccacgtgaatgttggtaaacagtggctgtacttgtttctggaa 304

                                                                       
Query: 181 agttcagtacttgtgtgagaggaaaaggcagcccccaccaaaggaggtagaagggagaga 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 303 agttcagtacttgtgtgagaggaaaaagcagcccccaccaaaggaggtagaagggagaga 244

                                                      
Query: 241 agaggctttgaagagcagactggggtggaggtgggatgaagaa 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 agaggctttgaagagcagactggggtggaggtgggatgaagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |