BAC Information

Click to search

BAC

Clone NameMSMg01-206D13
Chromosome19 (Build37)
Map Location 26,736,979 - 26,737,212
singlet/doubletsinglet
Overlap geneSmarca2
Upstream geneDmrt2, EG667806, 1700048O14Rik, LOC100041846, LOC100041857
Downstream geneGm815, LOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206D13.T7 (MSMg01no206_d13.b1)MSMg01-206D13.TJ (MSMg01no206_d13.g1)
ACCAG389918AG389919
length683706
length of high quality
(start - end)
366 (36 - 401)234 (112 - 345)
definitionCHROMAT_FILE: MSMg01no206_d13.b1 PHD_FILE: MSMg01no206_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:19 2005CHROMAT_FILE: MSMg01no206_d13.g1 PHD_FILE: MSMg01no206_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCC
ACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTT
AGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTAT
TGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCAT
TTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAA
TTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTA
TTAGTTTCAGTGTCTCTGGTTTTATGTGAAGATCCTTGATCCACTTAGAT
CCCACCCCCAAACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTACA
CGATAACAACCAGTTGTGACAGCATAATTTGCTAAACACATGAAACTCAA
GAAGAATGAAGACTGAAGTGTGGACACTATGCCCTTCCTTAGATTTGGGA
ACAAAACACCCATGGAAGGAATTACAGAGACAAAGTTTGGAGCTGAGATG
AAAGGATGGACCATGTAGAGACTGCCATATCCAGGGATCCACCCCATAAT
CAGCATCCATACGCTGACCCCATTGCATACACT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCAAAAATGGAACCTTCAGTGGCTGGTAGCTGGCCAGTTTCT
TCTCCGCAACAAAGGTTTCTGTCATCGTTGGAGCATCTCCCCATGCTAGC
TAGGTGGGGAGCCCATGGGTGTGATTTCATGTATCAGCCTTCTGGGCCGG
TACATACTTCTTCAACTAGATAGCAATACACAAAGTACAAGTCTTGGGCA
GGTCTAAGTGTAGGCGCCTTTATTTCCCTAATCTTTGGTACAAACTCTGT
TGTTTAGACTTCATCACCCTCTGTCTATAGTCTCTCTGTGTCTATGTGTC
TATCCTCCCATCTGGATCTGTCTGTCTGCCTGCCTGTCTTGTCTACCCCC
CCCCTTCCTTCCCTTCCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTACGCTCATGTTGTGATGTTCTTTCCAAAGTGTGTTTTTCGTTTG
GATTTTTATATTATATTTTATTAACATTTCTAACCGTTTTTCAATTTACT
GGATCTTTTTTTGTATATTTTTTTTTCCTCTTAACAATTTTCTCACATTT
TTCCCTTCTTGCTATACCCTATCACTCTCTTTTTCCCTATAATATTCGCT
TTTTTTCTTTTTCCGTGTTATGCCCTTCTCTATCCTCATCTACTGATTTA
TTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_d13.g1 MSMg01no206_d13.g1 CHROMAT_FILE:
MSMg01no206_d13.g1 PHD_FILE: MSMg01no206_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:20 2005
         (234 letters)



>mm_chr19_26736779_26737412
          Length = 634

 Score =  453 bits (234), Expect = e-132
 Identities = 234/234 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggtttctgtcatcgttggagcatctccccatgctagctaggtggggagcccatgggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggtttctgtcatcgttggagcatctccccatgctagctaggtggggagcccatgggtg 260

                                                                       
Query: 61  tgatttcatgtatcagccttctgggccggtacatacttcttcaactagatagcaatacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatttcatgtatcagccttctgggccggtacatacttcttcaactagatagcaatacac 320

                                                                       
Query: 121 aaagtacaagtcttgggcaggtctaagtgtaggcgcctttatttccctaatctttggtac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagtacaagtcttgggcaggtctaagtgtaggcgcctttatttccctaatctttggtac 380

                                                                 
Query: 181 aaactctgttgtttagacttcatcaccctctgtctatagtctctctgtgtctat 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaactctgttgtttagacttcatcaccctctgtctatagtctctctgtgtctat 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)