Query= MSMg01no206_g16.b1 MSMg01no206_g16.b1 CHROMAT_FILE:
MSMg01no206_g16.b1 PHD_FILE: MSMg01no206_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:35 2005
(602 letters)
>mm_chr19_23889596_23890602
Length = 1007
Score = 1093 bits (565), Expect = 0.0
Identities = 592/603 (98%), Gaps = 5/603 (0%)
Strand = Plus / Minus
Query: 5 gaattcccattcttgcgagtctggtacctccaaaatcattaggaagcagcagagaagagg 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 gaattcccattcttgggagtctggtacctccaaaatcattaggaagcagcagagaagagg 748
Query: 65 ga----agagagagagagaagactgatgtggatttcttcttgagaggttctaagctgaaa 120
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 gaagagagagagagagagaagactgatgtggatttcttcttgagaggttctaagctgaaa 688
Query: 121 tccacaatggcctaaggctcatttgtctgtggtatcatggtatacacatttcatctggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tccacaatggcctaaggctcatttgtctgtggtatcatggtatacacatttcatctggtt 628
Query: 181 atcgcctcatgcagcccccaggagaggatcccacgcctcacactgagcccctgcctgcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 atcgcctcatgcagcccccaggagaggatcccacgcctcacactgagcccctgcctgcct 568
Query: 241 tgaggatcaac-agtgctcttctcccgtcttgtctggtttgtggtttccttggttttgac 299
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tgaggatcaacaagtgctcttctcccgtcttgtctggtttgtggtttccttggttttgac 508
Query: 300 caggatgggggatgttcacaacactgctacattaatacccctttctctgttttcataaca 359
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 507 caggatgggggatgttcacaacactgctacattaatacccctttctctgctttcataaca 448
Query: 360 tagaggaaacacacacgctgtgatcactagcaatttcctaactatgatccaaataattct 419
|| |||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tataggaaatacataggctgtgatcactagcaatttcctaactatgatccaaataattct 388
Query: 420 gtggaaataacacaggtggcagaaagccctactcaagtccagctctgggctcttactaac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gtggaaataacacaggtggcagaaagccctactcaagtccagctctgggctcttactaac 328
Query: 480 agtgtggcctctgcctttgacttttttgatatttatgaaatgcagccagagggcacagtc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 agtgtggcctctgcctttgacttttttgatatttatgaaatgcagccagagggcacagtc 268
Query: 540 tgtacctcaccctatcacttaccagatatatgctctaagctggagcaagtttcctgactg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgtacctcaccctatcacttaccagatatatgctctaagctggagcaagtttcctgactg 208
Query: 600 tta 602
|||
Sbjct: 207 tta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1007
Length adjustment: 10
Effective length of query: 592
Effective length of database: 997
Effective search space: 590224
Effective search space used: 590224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no206_g16.g1 MSMg01no206_g16.g1 CHROMAT_FILE:
MSMg01no206_g16.g1 PHD_FILE: MSMg01no206_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:35 2005
(452 letters)
>mm_chr19_23787295_23788152
Length = 858
Score = 735 bits (380), Expect = 0.0
Identities = 440/466 (94%), Gaps = 15/466 (3%)
Strand = Plus / Plus
Query: 1 agatagtcaaagattgagtgcctgagactagttgggggatgagaattctcttcccttggt 60
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 194 agatagtcaaagattgagtgcctgagactagttgggggatgagaatt-tattcccttggt 252
Query: 61 att--------ggggggcgggggaggctttttctgcaggtgtgtgtatgtaaaaatattt 112
||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 attggggggtgggggggcgggggaggctttttctgcaggtgtgtgtatgtaaaaatattt 312
Query: 113 gaaatcagcaaataatgttaacactgttctgaatatgc-aaaaattgatgtttataactt 171
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 313 gaaatcagcaaataatgttaacactgttctgaatatgcaaaaaatggatgtttataactt 372
Query: 172 cgattagaaaagaaaagcttaaaaaacagct-aaaaattaaacagacactatggcattag 230
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 373 cgattagaaaagaaaagcttaaaaaacagctaaaaaattaaacagacactatggcatttg 432
Query: 231 gtatttaactatgttaagtaattaaaagacaggacttttttaaaaagtagactaggtaat 290
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gtatttaattatgttaagtaattaaaagacaggacttttttaaaaagtagactaggtaat 492
Query: 291 gataaaaatatgtaaactccagaaata---cttagtacatataattatgtgaagaccccc 347
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 493 gataaaaatatgtaaactccagaaataattcttagtacatataattatgtgaagattcca 552
Query: 348 ctaatgttaaatatgacatgttacatagaaaaa-gattatttactcagtttgtgacaact 406
||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||
Sbjct: 553 ttaatgttaaatatgacatgctacatagaaaaaagaatatttactcagtttgtgacaact 612
Query: 407 ggcaatatttggattgactttttagaaaacaattaagttagattct 452
|| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ggtaatatttggattgactttttagaaaacaattaagttagattct 658
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 858
Length adjustment: 10
Effective length of query: 442
Effective length of database: 848
Effective search space: 374816
Effective search space used: 374816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
