BAC Information

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BAC

Clone NameMSMg01-207K22
Chromosome19 (Build37)
Map Location 16,920,537 - 16,920,812
singlet/doubletsinglet
Overlap genenone
Upstream genePsat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a
Downstream geneFoxb2, A230083H22Rik, Gcnt1, Rfk, Pcsk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207K22.T7 (MSMg01no207_k22.b1)MSMg01-207K22.TJ (MSMg01no207_k22.g1)
ACCAG390832AG390833
length1,2181,255
length of high quality
(start - end)
50 (118 - 167)325 (77 - 401)
definitionCHROMAT_FILE: MSMg01no207_k22.b1 PHD_FILE: MSMg01no207_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:55 2005CHROMAT_FILE: MSMg01no207_k22.g1 PHD_FILE: MSMg01no207_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCGGTCATTTGCGCTATCGACTCCATAGGGAGAGGATCCGCGGAATTC
TTTTAGCCTCTGGCTCCCCTTTAGGATTTAACGAATGTTGCATGGNATTG
TTTTATGCCTTTGAAGCTTTTCTTCACCCTTTTTCTCGCTTTTTCCTCCT
TCTTTCTCTTTCTCTTTCTCTTTCTATTTCTCTTTGACTTTCTTTTTCTC
TTTCTTTTTCTTTTGAGAAAGGATCTTGAGTTCGTGGCAATTCTTATTCT
CTTAGCCTCACAAGCACGATGATGATTGCAGATGTGTAATCTGGCTCTGA
ATTTTGGAGCACATTCTGGATAGGATATTACACAGCCTATAAGTAACAAA
AATTTCCCTGATGGTTTCTAATGTCAACATCTTTCTGACCTTTTTTTTTT
TCTGTTAACAGTGACCCTTCAAGTGTAAATTTCCTTGCTCATAAAGTCTT
TCTTTTTTTCCCCACCTCTACTATTTTACTGATGCAAAAAAAAAAAAATG
GTCACAATCTCAGAGACTTATTACTTTATAAATTCATTATCTTATAGTTC
TGTAGGTTGGTGATCCAATAAAAGCCTTGCTGTCCTAAAGCAACTTGTCA
ATATGGTTGTATTTCTCCTGAAGGCTCCAGCAAAAACTCCTGGTTTTTTA
TTGTCTCCTTTTCTATTTCTGGAAATTAGACGCTTCTGTATTTCTTGATG
TGTGGTCATTTAATCGTATAAACCAATGATTTCTCATTTCTCTGATGAAT
CTCAAGTTTTCACTATCCCTTTTCTATACTGAATGTGGATCCAGGTTATT
ATGTTCGATAAATATGTATTTGGTTTACAATGTTATTTATCCTTTTATCA
AAACTTTTGATTGACTTAGGTTTTCCATTAATTTTTCCCTGCCTGACTTT
GTTTTCCTTTGTTATTTGGCATACCTTTACTTTCCAGTTTTTTTTTCTGC
CTTCATTTCTTGAAAATTTGGTATTTTCAATCGGCCACTGAAATAGGGTT
TTATTCTTCAAACTAAAAAAATATTTACTTTTTTTGGCAAGTTTTTTTTA
TTTAACATTTTTTTATAATTAAACCTTGCTTTTTTAAAATACAGGGTTAT
CTTTAAATTTGTTAGTATTGGTGTTTTTTTTTTATACATTATTTTTTTTT
TTTGTCTATTACTTCCCTTTTNTGGTTTTTCTTTTTTTGCTCCATAAATA
ATTTTTTTTTCTTTTTTT
NTATTTTGATGTGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTTTTGGTACTGAAGAAAGAAAGAAAGAAAGAA
AGAAAGAAACATTGAAAGAAAGAAAGAACGAAAGAAAGAAAGAAAGAAAG
AAAGAAAGGAAGGAAGAAAGAAAGGAAGAAAGAACCCTAAGAATCAGCCA
TTAAAAATAACGTAGGTAAATGGGGATTCAGACCAAATATATGAAATTAG
GAGATTGTTCATTCCCTTAGATACATACGTCATGAAATGTTAATGTTATG
TGATTATATAAAGGGACTTGTCTGTCTTTTTCTCTGCTTTTGTTTTCATT
TTTATGTAACAGGGTCTTGCTGTGAAGTACAGGCTGGCTTTGAACTTGTG
ATTATTTTGTCTTGGTCTTCTGAGTGTTGGATTAATAATGCACACTACCA
TACTTTTTTTTTTGCCACCCCCATCTTCCTAGGAGTCTGAATAAAAAAAA
AGAATGAAGGATCATGAAGTCACAATAGGTTAATAGATATGACCATAGAT
GGAAAACTATGCTAATGTCTAGGTACTGTGTGTACATGGATCTTGAGTCT
GGATGGTGGGGCTACAGCTGCTCACTGTACTGTTCTTTCAATACTCATTT
CTCAGTATGCTTGACTCTTTTTATAGATAAGAAGGCTCAGAGGCCATGTC
AGAGAATATCTCTGTTGGGCTATGGAGGGTTTGAGTTCTCGAAAGATGGT
CTTGTCGAGAGATGGATTGTTTTTTCTCTTCAAAGAGACAGAATTTAGTG
ATGAAATTTTTTAGTGTAAAGCCCCTAAGAATAATTTTTAGAAAGGGGAC
TTTTTTGCCTTTGGTTAATGTGAATTAAATCAGTTTTTGTATTGGTAAAA
AAAGGTCTGTTTTTTTTCTTAAATAAATCCCCTTCCTAGGGTTTATTGCC
TTGTGGGTAAGAATGGAGGTTAGTTTATTAAAAATTTTATAATTTTTTGG
ATAAAAAATGTTTTTGTAAAATTTTGTTTGGTAAGTGTAACAAAATAGGT
TTTATGGTGGTGGTGTTTGGTTTTGAGGTTTAAATAAATAATTTTTCTCA
AGAATATTTGTAAGGTTATTGGTTGTTTTTTATAAACTATAATGCTTATT
AAATAAAAGGTTGCTTGGGTGGTATTTAAAAATATAATTGTGACTTTTAT
ATATAAAGATGATTGTGTTCTGTGTGTTTAATATTAAGTGGGTGGATAAA
ATGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_k22.g1 MSMg01no207_k22.g1 CHROMAT_FILE:
MSMg01no207_k22.g1 PHD_FILE: MSMg01no207_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:55 2005
         (325 letters)



>mm_chr19_16920288_16921012
          Length = 725

 Score =  487 bits (252), Expect = e-142
 Identities = 274/288 (95%), Gaps = 12/288 (4%)
 Strand = Plus / Plus

                                                                       
Query: 38  gaaagaaagaaagaacgaaagaaagaaagaaagaaagaaagaaaggaaggaagaaagaaa 97
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaggaaggaagaaagaaa 309

                                                                       
Query: 98  ggaagaaagaaccctaagaatcagccattaaaaataacgtaggtaaatggggattcagac 157
                |||       |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 -----aaa-------aagaatcagccattaaaaataacgtaggtaaatggggattcagac 357

                                                                       
Query: 158 caaatatatgaaattaggagattgttcattcccttagatacatacgtcatgaaatgttaa 217
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 caaatatatgaaattaggagattgttcattcccttagatacatacgtcatgaaatgttaa 417

                                                                       
Query: 218 tgttatgtgattatataaagggacttgtctgtctttttctctgcttttgttttcattttt 277
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 418 tgttatgtgattatataaagggacttgtctgtctttttctctgctgttgttttcattttt 477

                                                           
Query: 278 atgtaacagggtcttgctgtgaagtacaggctggctttgaacttgtga 325
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 atgtaacagggtcttgctgtgaagtacaggctggctttgaacttgtga 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)