BAC Information

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BAC

Clone NameMSMg01-209M15
Chromosome19 (Build37)
Map Location 11,463,843 - 11,464,147
singlet/doubletsinglet
Overlap geneMs4a4a
Upstream geneSyt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7
Downstream geneLOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209M15.T7 (MSMg01no209_m15.b1)MSMg01-209M15.TJ (MSMg01no209_m15.g1)
ACCAG392181AG392182
length727734
length of high quality
(start - end)
310 (46 - 355)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no209_m15.b1 PHD_FILE: MSMg01no209_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:03 2005CHROMAT_FILE: MSMg01no209_m15.g1 PHD_FILE: MSMg01no209_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGGAACAAGAAGAAGAGCTAGACAAACTTAATCTTGAGAGTTGT
GGGTTAAAATAAGAGATTCTACCTTAAAGTAGAGAGCAATCAAGAAAGAT
TTTGGCCTACACACACACACAAACAAACAAGTGACAGGCAGACAGAAACA
TACATATATTTGTGTGTATTGGCACAGACACTCAAAAGAACATGCACACA
TATTTTCATGCACACCACACACAAACAAAACATTCAACAAAAAATGTGTG
CACTTCAAGGTTGTTGACTGATGCCACTGGTGGCCAGGTATGAATATACT
TGGCTTTTTTAGTTTACCCCGNGCCTTCCCTATGGAGGTCCTCTGGCATA
AGATCGAGCAGCACACACACAAAATAAGACTTACACAATTCAGAAGACTT
TATGACCTTAACAAGAAGGTGGCTGGTTGAGACAAATGAAGAAAGCACCT
GCAGAGCTTACAGCAAACCAGGGCTATTCTAAGCATTAAGTATTGTGTGA
CCTCACGGGCCTCATGACCAAGAAACCCCTCCTACACAGCTGTCAATCCC
AGAGCTGTGCTCCTATCATTGCACCCTGGATGTCTACAAGTAACAAACAG
ATCTTCAGAAATAGAAAGCTAGATTCTTAATCAGAATAAATACATAAAAG
AGGTGAGTTATAGGCAGGAAACTCCAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTATAACCCCATGGGACAAGGAA
TAGTTGAATGTGCTCATCGCACTTTAATAAATTGGCTTTTAAAAACAAAA
CAGGGGCAGTTATATTCCCCAAGGCCACCAAATACACATCTTGCTTTTGC
TTTATTTGTTCAAATTTTTTTGCAAACTGATGTTAAAGGTCAGTCTGCAG
TGGATTGCCACTGGCATCCAGTTATTTCTAGTTCTTATGCCATGGTAAAG
TGGCGGGAGTAATGAATGGAAGGGTCCAGACCTGGTCCTAATCTGGGAAA
GGGGCTCATTCTGTTTTCCCCGTTCGTCCGCTTGTTTTGGTTTTTTTTTT
TGNNNNNNTTNTNCCCCCAAAAAAAAAAAAAAACTNTGGGGGGGCGGGCG
TTTTTTCTCTTCGCCCCTTTGACTGCTTTGCTACCCTCCCTTTTTTCCAT
TTTCTTATCTTCTCCTTCTACTCTCCATTCACACTTATTTTATACTCCCC
CTTTTCTTCTCTCCCTTATCCCTTCCTATTTTTTTTATTTTATTCCTCCC
TTTTCCTAATTATCTTCACCCTCTATCGTTAAAACGCCCTATAATACTTT
TTCTTTTTTATGCATAAACATCCCTTTTCCCCTTTTTTCCCCTCTCCCGC
TATTATCTCCTTAACCTTATTAAATTACCCCGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_m15.b1 MSMg01no209_m15.b1 CHROMAT_FILE:
MSMg01no209_m15.b1 PHD_FILE: MSMg01no209_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:03 2005
         (310 letters)



>mm_chr19_11463639_11464348
          Length = 710

 Score =  590 bits (305), Expect = e-173
 Identities = 305/305 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttggaacaagaagaagagctagacaaacttaatcttgagagttgtgggttaaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gaattcttggaacaagaagaagagctagacaaacttaatcttgagagttgtgggttaaaa 450

                                                                       
Query: 65  taagagattctaccttaaagtagagagcaatcaagaaagattttggcctacacacacaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 taagagattctaccttaaagtagagagcaatcaagaaagattttggcctacacacacaca 390

                                                                       
Query: 125 caaacaaacaagtgacaggcagacagaaacatacatatatttgtgtgtattggcacagac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 caaacaaacaagtgacaggcagacagaaacatacatatatttgtgtgtattggcacagac 330

                                                                       
Query: 185 actcaaaagaacatgcacacatattttcatgcacaccacacacaaacaaaacattcaaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 actcaaaagaacatgcacacatattttcatgcacaccacacacaaacaaaacattcaaca 270

                                                                       
Query: 245 aaaaatgtgtgcacttcaaggttgttgactgatgccactggtggccaggtatgaatatac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aaaaatgtgtgcacttcaaggttgttgactgatgccactggtggccaggtatgaatatac 210

                
Query: 305 ttggc 309
           |||||
Sbjct: 209 ttggc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)