BAC Information

Click to search

BAC

Clone NameMSMg01-211H04
Chromosome19 (Build37)
Map Location 53,292,259 - 53,292,574
singlet/doubletsinglet
Overlap geneAdd3
Upstream geneIns1, LOC100043450, Xpnpep1, LOC668545, LOC674277
Downstream gene1700001K23Rik, Mxi1, Smndc1, Dusp5, LOC100043462, Smc3, Rbm20, LOC100042979, Pdcd4, 2310002J21Rik, Shoc2, Adra2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211H04.T7 (MSMg01no211_h04.b1)MSMg01-211H04.TJ (MSMg01no211_h04.g1)
ACCAG393163AG393164
length658806
length of high quality
(start - end)
294 (1 - 294)---
definitionCHROMAT_FILE: MSMg01no211_h04.b1 PHD_FILE: MSMg01no211_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:37 2005CHROMAT_FILE: MSMg01no211_h04.g1 PHD_FILE: MSMg01no211_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTTCGGCATTGGACTCAACTCCTGTGATTAAATTCACAAGGGCACAT
AACAAAATGATTTACCAGGCCACACTGGGCAGCCTGGATGGCCTGTGCTT
ATTTTAGCAGCTACACTGGAAACCTGATATAATCCTAACCTAGATACCAT
GTGCCTAAGAGTGCTAACTCTCTGCCTTAGGAGCCAGCCCTGGGATCTTC
ATCATGTGTGAACTTATAAATCCATTTTGCTTCTCCAATCCAGCGATTCT
CTCACTTTCCATCGCTTTATGTGACCTGTGAAATCCCACTAAGGCAGTGG
CTCTCTTTTTTTTTCCCCGTGCATATCCCGCATTTTAGGGGTTGCCTAAG
AGTACTGGTTATCATAGGTACAAAAATAATGACTTATGACAGTAGGAAGA
TCACAGTTATGATGTATCCCAAACAATTACTTTTCCGCCTGCCTGTCACT
ACAACATATATGAATTGTCCGATTTCTTCTCCGCGTCCCTTTTTGCGCAT
TTCCCCGCTTTATTGCGCCTCCCCTATTGTCCCCGTCTCCCCCCTTCGCC
CCTTTATTACCCTCTGCTACGTTTTTTTCCCTCTTTCCCCCCCCTCCCCT
TTCACGTCCTTTTCCCCTTCTTTTTTCCCCACCCCCCCACCCCCTTTCCC
TTTCCTTT
TAATCCATTTTTTTAATTTANTTCNCCTGNGGGGCCTAAAATAAAAAAAG
AATGAAGCGGGAGGNCGGGNGGNGNCTGGTTTCGAAGNNAGNNNGNNNNN
NNGNNGGTTACAAAAAAAAGGGGNGNGNNNNGGGNGGGNNNNNNGNNNNG
GGGNNNNGGGGTTTTNGCCCCNNNGGNGGGGGGNGGGGGNGNGGGGNNNG
GGNGAGGGNNNNNGGGGGGNGGGNGNNNGNNNGGGNNGGGGGGNNGGGNG
GGGGGAGGGGGGGGGAGAAGGGGGGGGGGNGNAANNNNGGAAGGGAAAGT
TTTGTAGGATTTGATATTGGAGGATTGGGATGAGTAGAAGATGGAAGGGG
AGGGGAGGAGGGATTTTTTTTTTTTTAAAGAAAGGAAAAAGAGAAAAGAA
AAGTTTTTTTTTGTTTACCACACCCCAACGAAGAAAAGTATGAAGAAAGG
GGGGGGGGGGGGNNNNGAAAAAAAAAAAAAAAAAAAAANNGGGGGGCGGG
GGGGGGGCGCNCCCNNNGGGGGGNNGGGGCCCCNCCGCGGGCGGGGGGGG
GGGGGGGGGGGGGGGGGGCCCCGGGGGGGGGGGGCGGGGGGGGGGGNNGC
GGGGCGGGGGCGGGGCGCGGCGGCGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGACGCGCGGGCGGGNCGGGGGCGGCNGGGGGGCAGGGNNNGGGGG
AGGNCGGGGGNGGGAGGGAGGAAAAAAGAGGGGAGAAAGATTTTTTGTTT
TGTTAAGAGGGAGGAGGTGATAGATTTAATGAGAGGAGTATGAGTTGATT
AATGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_h04.b1 MSMg01no211_h04.b1 CHROMAT_FILE:
MSMg01no211_h04.b1 PHD_FILE: MSMg01no211_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:36:37 2005
         (294 letters)



>mm_chr19_53291992_53292685
          Length = 694

 Score =  493 bits (255), Expect = e-144
 Identities = 291/317 (91%), Gaps = 24/317 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccccttcggcattggactcaactcctgtgattaaattcacaagggcacataacaaaatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ccccttcggcattggactcaactcctgtgattaaattcacaagggcacataacaaaatga 524

                                                                       
Query: 61  tttacca----------------------ggccacactgggcagcctggatggcctgtgc 98
           |||||||                      |||||||||||||||||||||||||||||||
Sbjct: 523 tttaccaggccacactgggcagcctggatggccacactgggcagcctggatggcctgtgc 464

                                                                       
Query: 99  ttattttagcagctacactggaaacctgatataatcctaacctagataccatgtgcctaa 158
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ttattttagcagctacactggaaacctgatataatcctaacctagataccatgtgcctaa 404

                                                                       
Query: 159 gagtgctaactctctgccttaggagccagccctgggatcttcatcatgtgtgaacttata 218
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 403 gagtgctaactctctgccttaggagccagccctgggatcttcatcatgcgtgaacttata 344

                                                                       
Query: 219 aatccattttgcttctccaatccagcgattctctcacttt-ccatcgctttatgtgacct 277
           |||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 343 aatccactttgcttctccaatccagcgattctctca-tttcccatcgctttatgtgacct 285

                            
Query: 278 gtgaaatcccactaagg 294
           |||||||||||||||||
Sbjct: 284 gtgaaatcccactaagg 268


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)