BAC Information

Click to search

BAC

Clone NameMSMg01-212M14
Chromosome19 (Build37)
Map Location 24,409,803 - 24,410,107
singlet/doubletsinglet
Overlap genePip5k1b
Upstream geneMamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1, Gm967, 1700021P04Rik, Tjp2, Fxn, LOC667743, LOC100042457
Downstream gene2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503, Ankrd15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212M14.T7 (MSMg01no212_m14.b1)MSMg01-212M14.TJ (MSMg01no212_m14.g1)
ACCAG394015AG394016
length705700
length of high quality
(start - end)
311 (45 - 355)287 (75 - 361)
definitionCHROMAT_FILE: MSMg01no212_m14.b1 PHD_FILE: MSMg01no212_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:39 2005CHROMAT_FILE: MSMg01no212_m14.g1 PHD_FILE: MSMg01no212_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGGATGTGGTAGGTGTGGGGTTAAGAAAAGGCTGATAAGTTTACT
CTCTACAGGGAGATGTTCCCAGCTAATGCACAAAAGAAAGATGCAGAAAC
AGCAGTCTACTCCTGCTACTTAGTGACGCAGATGTAAGTAGGGAGGGATT
AGCCCAAAGAGCTGAAGACACAGCATCCGAGGAGCAAAACCCACGTGGAG
GTGGACAGAGCCCTGTTCCTTCTCCTCGTACATTTTATAGAGCCATCTGA
CTGCTAAACACTGCACATTTTGTGTGTGTGTGTACAAGTTTGTGTGTGTG
TGTTTTCTTGTGTCCCCCCACCCCCCCTTGATACAAAAAGAAATAAATGG
AAGGATTGATACCCACAAGATAACAAAGGGTTCCTTCCATCTCCAAAGGT
CCAGGATTAGAGTGAGCTTTCTACTGGGAGTGGGCATAAGAGTTAACATG
TTAACACTTCATTTCCCATATAAGATTATACCGGATTTTGCAATGTTGCC
CACTCCCCTGCCCACTTAGCCGCGAGACAGACAACATCCAGCAACTATAG
TAGATTGTATATAGCATGCTCCAATCCTGATGCTCCCTCCCACTATCAAT
ACACAATTATGATTTCTTGCACAACAAATGCTCACAGAATCATATACATT
CTTAG
ATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGTAAGCTGAGACCAATCTACTCTA
CATATTGAGTTCCAGGCCAGCCAGAGGTACATAGTGTGGACATGGAGGGA
GAGACAGAGAGAGACACAGAGAGAGAGACAGAGAGAGACAGAGAGACAGA
GACATAGACAGAGAGAGAGGAGGAGGAGGAGAAGGGAAGAAAAAAGAATT
TGTCTCTCTGTGGAGACCTGAAAATTTAGATTTTTGTCACTTGTGAATCT
TCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCT
TTCTTTCTTTCTTCCCCCCCCCCCCCCTTCCTTTTCTTTCCTTTTCTTTT
CTTTTCCTTTTTTCCCGACCAACTTCATCGTGTAAGTATTCTCAGTCACC
CCCAGACACAATGTAGGTTCCATTTAAGGGAAATGGGGTTTGCCTGGGGT
CTTGTCACCTTGTTCCTTGAGGGGAGAGGTACTGCTCCCACCTCCACCCG
GTGACATCTCCTCTTCCAGGAAGGACAGAAGCCTCCTTGTGGAGTAGCAA
CCCTTGCTCACAGAGAACCTATATGTGTTGTTAACCTAACTCCCCTGAGG
TATGTGTTTACAGTATGTATTCTTCACTTCTTGTGTCTGCGGTCCGTTTC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_m14.b1 MSMg01no212_m14.b1 CHROMAT_FILE:
MSMg01no212_m14.b1 PHD_FILE: MSMg01no212_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:39 2005
         (311 letters)



>mm_chr19_24409599_24410309
          Length = 711

 Score =  543 bits (281), Expect = e-159
 Identities = 299/305 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatggatgtggtaggtgtggggttaagaaaaggctgataagtttactctctacag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatggatgtggtaggtgtggggttaagaaaaggctgataagtttactctctacag 264

                                                                       
Query: 65  ggagatgttcccagctaatgcacaaaagaaagatgcagaaacagcagtctactcctgcta 124
           |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggagatgttattagctaatgcacaaaagaaagatgcagaaacagcagtctactcctgcta 324

                                                                       
Query: 125 cttagtgacgcagatgtaagtagggagggattagcccaaagagctgaagacacagcatcc 184
           ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 325 cttagtgacgcagatgtaactagggagggattagtccaaagagctgaagacacagcatcc 384

                                                                       
Query: 185 gaggagcaaaacccacgtggaggtggacagagccctgttccttctcctcgtacattttat 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 385 gaggagcaaaacccacgtggaggtggacagagccctgttccttctcctcgtaaattttat 444

                                                                       
Query: 245 agagccatctgactgctaaacactgcacattttgtgtgtgtgtgtacaagtttgtgtgtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agagccatctgactgctaaacactgcacattttgtgtgtgtgtgtacaagtttgtgtgtg 504

                
Query: 305 tgtgt 309
           |||||
Sbjct: 505 tgtgt 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)