BAC Information

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BAC

Clone NameMSMg01-213K06
Chromosome19 (Build37)
Map Location 49,370,505 - 49,370,796
singlet/doubletsinglet
Overlap genenone
Upstream geneSorcs3, LOC100042896
Downstream geneLOC629448, Siah1-ps1, EG433251, Sorcs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213K06.T7 (MSMg01no213_k06.b1)MSMg01-213K06.TJ (MSMg01no213_k06.g1)
ACCAG394568AG394569
length305742
length of high quality
(start - end)
---292 (60 - 351)
definitionCHROMAT_FILE: MSMg01no213_k06.b1 PHD_FILE: MSMg01no213_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:43 2005CHROMAT_FILE: MSMg01no213_k06.g1 PHD_FILE: MSMg01no213_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCACCTCCCCCCAGCACGGGGATCTATGTCTAATTTTCCCCCGTCGGGC
AGGACGGCCTTTTCACAATCGTTTTTTTGGGTAAAGGCAATATAGAAAGT
AGAGAAAATAAAAAAACTCTCGCACCTGTTGGTGGGAACGTCTCCGAAAG
AAAAATAGAAAAAGCCCCAATCCAGAATAACCCATATAGTCCGAGAATAA
TGTAACGTTGACAAAAACTTGACTATTGGCCCTAACACAAAGTGAGACGG
GATCTCACGAGATACGAGGCGAGAGCCTGGTATGTTCACAACTTAACACA
GGTAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCCCTACTGCAGTACTCTAGACTGCTGTCTTCTATACCTGT
TAAACTTAGCTCGTAACTTGTTCTGTCAGCTAGGAGAACCCTCCATTCCT
CTCCCTGGCTTTGGAAAACTGTGAGGAGATAGTTTATGGATTCCATTTTT
GACCTGGGACTGTCACATATTTATTGCCACTAAAAGCAAGACTCATACTT
GGATTTAAAATCCTTAAGAGACAGACCATGCTGCAACCAAATATGAATGA
GTGACCATGGCCAAGGAACACAGATTTAAGTCACTCTAAAACCCATGTTT
TATTCTTGTTAACAACTTGACAAAGTTTTTCTAGTAACACCTATTCCAGG
GTAACACGACCCATTTTTGGCCATTCTCTTCTAGTACTCTCACTAGAATT
TTGAAGTCATTGGGGTCAAAAAAGACCTCAGTGAGGACCTAGCTCTATCT
CAGACCCATATAAGGTCTGGGTTTGCTGTTTCAGTCTCTGTGATCTTTTA
TGAGCCCTGCTTAGTTGATTCTGAGGGCTATGTTCTCATGGTGTCCTCTA
CCCCTCTAGCTCCTAGAATCCATTTGTTCATGATTCATACCCGAAATGAC
TGCCCTTATTTGACAAGAATCAGTAGGTAGAATCTGTCAGGCCAATTACT
GGAATAAAAAAAAAAGTAAACTAACCAGTTTTATTTTGCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_k06.g1 MSMg01no213_k06.g1 CHROMAT_FILE:
MSMg01no213_k06.g1 PHD_FILE: MSMg01no213_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:43 2005
         (292 letters)



>mm_chr19_49370392_49371083
          Length = 692

 Score =  557 bits (288), Expect = e-163
 Identities = 291/292 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccctactgcagtactctagactgctgtcttctatacctgttaaacttagctcgtaactt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 405 tccctactgcagtactctagactgctgtcttctatacctgttaaacttagcttgtaactt 346

                                                                       
Query: 61  gttctgtcagctaggagaaccctccattcctctccctggctttggaaaactgtgaggaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gttctgtcagctaggagaaccctccattcctctccctggctttggaaaactgtgaggaga 286

                                                                       
Query: 121 tagtttatggattccatttttgacctgggactgtcacatatttattgccactaaaagcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tagtttatggattccatttttgacctgggactgtcacatatttattgccactaaaagcaa 226

                                                                       
Query: 181 gactcatacttggatttaaaatccttaagagacagaccatgctgcaaccaaatatgaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 gactcatacttggatttaaaatccttaagagacagaccatgctgcaaccaaatatgaatg 166

                                                               
Query: 241 agtgaccatggccaaggaacacagatttaagtcactctaaaacccatgtttt 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 agtgaccatggccaaggaacacagatttaagtcactctaaaacccatgtttt 114


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)