Query= MSMg01no217_a20.b1 MSMg01no217_a20.b1 CHROMAT_FILE:
MSMg01no217_a20.b1 PHD_FILE: MSMg01no217_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:21 2005
(292 letters)
>mm_chr19_52176702_52177393
Length = 692
Score = 391 bits (202), Expect = e-113
Identities = 250/278 (89%), Gaps = 20/278 (7%)
Strand = Plus / Minus
Query: 14 agattctctgagccagccacagattcacagagtcagccacagatgacacagagccagctg 73
|||||| | |||||||||||||||||| ||| ||||||||||||||||||| ||||
Sbjct: 490 agattcacagagccagccacagattcatagaatcagccacagatgacacag----agct- 436
Query: 74 cagattcacagagccagccccaggagctggaagggttctagtcacagaagtttacttgct 133
||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 435 ---------------agccctaggagctggaagggttctagtcatagaagtttacttgct 391
Query: 134 ttctcttctgctaagtagatgttgtccatcttgctatttgtcagcttccaggtttgaaag 193
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 390 ttctcttctgctaagtagatgttgtccatcttgctatttatcagcttccaggtttgaaag 331
Query: 194 tggctgctccttaccttggagtgttacagggacagctctcattacaggaacagctcgacc 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tggctgctccttaccttggagtgttacagggacagctctcattacaggaacagctcgacc 271
Query: 254 tggtgttgggcccctacaatcctaaacgttaatgcagt 291
|||||||||||||||||||||||||| |||||||||||
Sbjct: 270 tggtgttgggcccctacaatcctaaaagttaatgcagt 233
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no217_a20.g1 MSMg01no217_a20.g1 CHROMAT_FILE:
MSMg01no217_a20.g1 PHD_FILE: MSMg01no217_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:21 2005
(304 letters)
>mm_chr19_52136658_52137361
Length = 704
Score = 549 bits (284), Expect = e-161
Identities = 299/304 (98%)
Strand = Plus / Plus
Query: 1 tctcctttaaactacagttctttttttgagactcaggtcctatcttcctccagtcaaaca 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tctcctttaaactacagttctttttttgagactcaggtcctatcttcctctagtcaaaca 260
Query: 61 gtcttcaaagattatattaaaacttgtaagtaaaactctattttgtgaataaaaacattg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcttcaaagattatattaaaacttgtaagtaaaactctattttgtgaataaaaacattg 320
Query: 121 ttttggagtgtctcaatattgtataggccataggtcttaatatagttacattaagccaca 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 ttttggagtgtctcaatattgtataggccataggtcttaataaagttacattaagccaca 380
Query: 181 atgagacctgaggctgtatgttagtggtgagcccttgcaaaaccctgggttagcaaaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgagacctgaggctgtatgttagtggtgagcccttgcaaaaccctgggttagcaaaaga 440
Query: 241 aaataatacaaagaataaaaggtcatcttatggaaaatatctatatgcattattataatc 300
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 441 aaataatacaaagaataaaaggtcatcttatggaaaatatctatatgcaataaaataatc 500
Query: 301 cata 304
||||
Sbjct: 501 cata 504
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space: 205025
Effective search space used: 205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
