Query= MSMg01no217_m06.b1 MSMg01no217_m06.b1 CHROMAT_FILE:
MSMg01no217_m06.b1 PHD_FILE: MSMg01no217_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:31 2005
(419 letters)
>mm_chr19_36963624_36964442
Length = 819
Score = 487 bits (252), Expect = e-142
Identities = 282/292 (96%), Gaps = 5/292 (1%)
Strand = Plus / Minus
Query: 4 ggaattcctaacataatacagaaagcctaagcttagtgggaaaataatggcagtaagaat 63
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 313 ggaattcctaacataatacagaaagcctaagcttagtgggaaaataatggtagtaagaat 254
Query: 64 aacacaagttggccgggcccttcacctcttacacatcccacctcttctgtcagcacagca 123
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 253 aacacaagttggccgggccctttaactcttacacatcccacctcttctgtcagcacagca 194
Query: 124 cagcacagcacagcacagcaccgcacagcacagcacagcacagcacagcacagcacagca 183
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 193 cagcacagcacagcacagcacagcacagcacagcaca-cacagcacagcacagcacagca 135
Query: 184 cagcacagcacagcacagcacacacagcacacacagcacagcacagcaca-cacagcaca 242
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 134 cagcacagcacagcacagcacacacagcacacacagcacagcacagcacagcacagcaca 75
Query: 243 gcacagcacagcaca-cacagcacagcacagcaca-cacagcacagcacagc 292
||||||||||||||| ||||||||||||||||||| |||||| |||| ||||
Sbjct: 74 gcacagcacagcacagcacagcacagcacagcacagcacagctcagc-cagc 24
Score = 163 bits (84), Expect = 3e-44
Identities = 87/88 (98%), Gaps = 1/88 (1%)
Strand = Plus / Minus
Query: 234 cacagcacagcacagcacagcaca-cacagcacagcacagcacacacagcacagcacagc 292
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 200 cacagcacagcacagcacagcacagcacagcacagcacagcacacacagcacagcacagc 141
Query: 293 acagcacagcacagcacagcacagcaca 320
||||||||||||||||||||||||||||
Sbjct: 140 acagcacagcacagcacagcacagcaca 113
Score = 149 bits (77), Expect = 3e-40
Identities = 86/89 (96%), Gaps = 3/89 (3%)
Strand = Plus / Minus
Query: 236 cagcacagcacagcacagcaca-cacagcacagcacagcaca-cacagcacagcacagca 293
|||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||
Sbjct: 203 cagcacagcacagcacagcacagcacagcacagcacagcacagcaca-cacagcacagca 145
Query: 294 cagcacagcacagcacagcacagcacagc 322
|||||||||||||||||||||||||||||
Sbjct: 144 cagcacagcacagcacagcacagcacagc 116
Score = 141 bits (73), Expect = 7e-38
Identities = 85/89 (95%), Gaps = 3/89 (3%)
Strand = Plus / Minus
Query: 241 cagcacagcacagcaca-cacagcacagcacagcaca-cacagcacagcacagcacagca 298
||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 203 cagcacagcacagcacagcacagcacagcacagcacagcacagcaca-cacagcacagca 145
Query: 299 cagcacagcacagcacagcacagctcagc 327
|||||||||||||||||||||||| ||||
Sbjct: 144 cagcacagcacagcacagcacagcacagc 116
Score = 108 bits (56), Expect = 5e-28
Identities = 72/78 (92%), Gaps = 5/78 (6%)
Strand = Plus / Minus
Query: 260 cagcacagcacagcaca-cacagcacagcacagcacagcacagcacagcacagcacagca 318
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 203 cagcacagcacagcacagcacagcacagcacagcacagcacagcaca-cacagcacagca 145
Query: 319 cagctcagccagccagca 336
|||| ||| || |||||
Sbjct: 144 cagcacag-ca--cagca 130
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 230
Number of extensions: 85
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 14
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space: 332100
Effective search space used: 332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| |
