Query= MSMg01no231_d20.b1 MSMg01no231_d20.b1 CHROMAT_FILE:
MSMg01no231_d20.b1 PHD_FILE: MSMg01no231_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:29 2005
(204 letters)
>mm_chr19_41005517_41006121
Length = 605
Score = 236 bits (122), Expect = 7e-67
Identities = 143/150 (95%), Gaps = 3/150 (2%)
Strand = Plus / Plus
Query: 5 gaattccaagttttaaaaaattatgttttgaac-tcagagacacagaagatttaaact-g 62
|||||||||||||||||| |||||||||||||| | |||||||||||||||||||| | |
Sbjct: 205 gaattccaagttttaaaatattatgttttgaacttgagagacacagaagatttaaa-tgg 263
Query: 63 aggaggaattatttgagacaggaagtggagttgatcaagtacattttaattaactggtta 122
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aggagggattatttgagacaggaagtggagttgatcaagtacattttaattaactggtta 323
Query: 123 cttattagttacacatacacacacacacac 152
||||||||||||||| ||||||||||||||
Sbjct: 324 cttattagttacacacacacacacacacac 353
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 605
Length adjustment: 8
Effective length of query: 196
Effective length of database: 597
Effective search space: 117012
Effective search space used: 117012
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no231_d20.g1 MSMg01no231_d20.g1 CHROMAT_FILE:
MSMg01no231_d20.g1 PHD_FILE: MSMg01no231_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:29 2005
(606 letters)
>mm_chr19_41038280_41039283
Length = 1004
Score = 1087 bits (562), Expect = 0.0
Identities = 595/612 (97%), Gaps = 11/612 (1%)
Strand = Plus / Minus
Query: 1 ctggctcttatctaaccaccagaaatcccctctagagtccagattgagctgggcctagac 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 957 ctggctcttatctaaccaccagaaatcccccctagagtccagattgagctgggcctagac 898
Query: 61 tcagttttggactgagccagtgggcctaccctttgggaggggggtggggtgccttttgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 tcagttttggactgagccagtgggcctaccctttgggaggggggtggggtgccttttgga 838
Query: 121 cctgacagttatggactttatcaaagc---------aaaaaaaaaatgggcaaatgtcca 171
||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 837 cctgacagttatggactttatcaaagcaaaaaaaaaaaaaaaaaaatgggcaaatgtcca 778
Query: 172 gaaatgtcccttgacaaaggcaggcctaggtaaagggccccactgttctgttcctgcggg 231
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 777 gaaatgtcccttgacaaaggcaggcctaggtaaagggccccactgttctgctcctgcggg 718
Query: 232 acttatcttttgtgctttaggttaagctttctgagaaagagatgaaaaaagaaatgacaa 291
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 717 acttatcttttgtgctttaggttaagctttctgagaaagagatgaaaaa--aaatgacaa 660
Query: 292 tatggatgtaattactgttcaaggcccacagaaaagcagccagttttggcgcccgtgggc 351
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tatggctgtaattactgttcaaggcccacagaaaagcagccagttttggcgcccgtgggc 600
Query: 352 agtcagctcaggggtctaaggacagacagtacatgtgcctgtgggtcagccagagctggc 411
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 agtcagctcagggggctaaggacagacagtacatgtgcctgtgggtcagccagagctggc 540
Query: 412 tagctggattcatgctttttgctctgtgtccctctcctgttacagacagccctgcagatg 471
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 cagctggattcatgctttttgctctgtgtccctctcctgttacagacagccctgcagatg 480
Query: 472 aagaggagcagtggtcagatgacttcgtgagtgtttgctcctgggatcaggagggtacca 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aagaggagcagtggtcagatgacttcgtgagtgtttgctcctgggatcaggagggtacca 420
Query: 532 gcctttcggggagacctcttcaatggcttctttctgaaccacactctgaaggctagctga 591
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gcctttcgaggagacctcttcaatggcttctttctgaaccacactctgaaggctagctga 360
Query: 592 gcaacacgggga 603
||||||||||||
Sbjct: 359 gcaacacgggga 348
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1004
Length adjustment: 10
Effective length of query: 596
Effective length of database: 994
Effective search space: 592424
Effective search space used: 592424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
