BAC Information

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BAC

Clone NameMSMg01-231N07
Chromosome19 (Build37)
Map Location 31,045,522 - 31,136,969
singlet/doubletdoublet
Overlap genePrkg1
Upstream geneTrpd52l3, Uhrf2, Gldc, EG625917, Mbl2, LOC100042088, LOC668020, EG546723, Dkk1, LOC625995
Downstream geneCstf2t, 8430431K14Rik, 1810073H04Rik, Asah2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231N07.T7 (MSMg01no231_n07.b1)MSMg01-231N07.TJ (MSMg01no231_n07.g1)
ACCAG398528AG398529
length678775
length of high quality
(start - end)
278 (4 - 281)288 (132 - 419)
definitionCHROMAT_FILE: MSMg01no231_n07.b1 PHD_FILE: MSMg01no231_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:12 2005CHROMAT_FILE: MSMg01no231_n07.g1 PHD_FILE: MSMg01no231_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,136,700 - 31,136,969)(31,045,522 - 31,045,807)
sequence
GAGGATCCGCGGAATTCAGTCTTATCTGAAAACAGATCATTTGTTCCATT
TTGTCGTGTTGGTAGGCAGAAGCCACAGAAACACTCAAGCCTGCTCCAGA
GAACAAGGCTGCTCTAGGGAAGGATTCAATAGCAAAGTACCGTGATCCTT
TGCTTTTGTAAGGGAATTTCTGGAGATGAACTCTGAAAGCTGGAGCTTCT
GAGGAGGCTGAAAGAGCAGGCGGTTGGGTTGTTCATGCTGGAATTACAAA
GACAGAAGAGGATTCAAATGCCTTCCAGCCAAAGTTATATCTGGGACGGG
GACAGCAACAAAAATGAATTCCCTCTCTTATTTCCCTCCCCTCGCCAACC
ATTGACTACATGTGTTTCTGGCTTGGAGCACACCCCCCACTATTACTATG
ATGATGATGATGATGGGTGTTTTAGGATCTCATGCAGCTAACGCTGGTTT
AGAACTTCCTATGCCTCTAATGATAAACTTGAATTTCTGGTTCTTCTGTT
TCTACTGCCTGACTGTGTACTGATGCTGTAGCGTGCACTACCATATACTT
TTTAGGGATATAACCCTTGGTTGTCATTGCTGTCGGGCACATATTCCTTC
TACTTAGGCACATCCCCTGCCCCTCATATTGCACATTCTGACTCCCCGAC
TTAGCTATTGTATCCTTCAATTGTCACC
CCTTCCTTTCTTTCCTCCTCCCTCTTGTATCTCTTCTTTTTACAACCNNN
NTNTTACTATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCTGCAAATATCTCTGAT
TTCGCTTACTGACTTCCCTATATCACCAGCTGCAGAGCAGTCACAAATGA
AGGTCACTCCTGAAGACTTAATTCTTGAGATTCCAGGGATGGGATGGTTT
AGAGATTTGCTGTTGCTTCTGTTCCCTCCATACTCCAATCCTTGTATGTT
CTTGTTAGACTAGGAATCCACACCCACTCAAAGACCTTCAATATCTCTAC
CAACCACCAAAATCAGTACAGATTATTGTCTCTGGCATTTCCAAAGAAAG
TATATGAGCAGGAAATTTTTTATTCTTCCCCCCCCCGCCCCACACAGTAT
GGAAGGCACGGCAACTGGTGTGAGAACACCCCAATTAACTTGCTAAGATC
AACAATTGACTTAAGTCAGGTGTGGTGCAGGGCTTTAAGCCCCACTTGTG
GGGAGTAAAGGCAAGAAGAGGCTCAGGAGTTGAGTGCCTTTTTTACCTAC
CCAGCTACTACAAAGACAGTCTGGGCTATTTGAAACCCTGCCTCAAATAC
AAGGACTACAAAACCCATGAATGATCTGATCAATTTCTCACACCTGTGCT
TTTGCTAACCAAGCTTCTCTACCTAATATGCTCCTGCCTGTGTGAGAATT
GTTCTTAACACCCATCTTTTCTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_n07.b1 MSMg01no231_n07.b1 CHROMAT_FILE:
MSMg01no231_n07.b1 PHD_FILE: MSMg01no231_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:12 2005
         (278 letters)



>mm_chr19_31136492_31137169
          Length = 678

 Score =  514 bits (266), Expect = e-150
 Identities = 269/270 (99%)
 Strand = Plus / Minus

                                                                       
Query: 9   gaattcagtcttatctgaaaacagatcatttgttccattttgtcgtgttggtaggcagaa 68
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 478 gaattcagtcttatctgaaaacagagcatttgttccattttgtcgtgttggtaggcagaa 419

                                                                       
Query: 69  gccacagaaacactcaagcctgctccagagaacaaggctgctctagggaaggattcaata 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gccacagaaacactcaagcctgctccagagaacaaggctgctctagggaaggattcaata 359

                                                                       
Query: 129 gcaaagtaccgtgatcctttgcttttgtaagggaatttctggagatgaactctgaaagct 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gcaaagtaccgtgatcctttgcttttgtaagggaatttctggagatgaactctgaaagct 299

                                                                       
Query: 189 ggagcttctgaggaggctgaaagagcaggcggttgggttgttcatgctggaattacaaag 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ggagcttctgaggaggctgaaagagcaggcggttgggttgttcatgctggaattacaaag 239

                                         
Query: 249 acagaagaggattcaaatgccttccagcca 278
           ||||||||||||||||||||||||||||||
Sbjct: 238 acagaagaggattcaaatgccttccagcca 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no231_n07.g1 MSMg01no231_n07.g1 CHROMAT_FILE:
MSMg01no231_n07.g1 PHD_FILE: MSMg01no231_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:12 2005
         (288 letters)



>mm_chr19_31045322_31046009
          Length = 688

 Score =  514 bits (266), Expect = e-150
 Identities = 281/286 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctgcaaatatctctgatttcgcttactgacttccctatatcaccagctgcagagcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctgcaaatatctctgatttcgcttactgacttccctatatcaccagctgcagagcagt 260

                                                                       
Query: 61  cacaaatgaaggtcactcctgaagacttaattcttgagattccagggatgggatggttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacaaatgaaggtcactcctgaagacttaattcttgagattccagggatgggatggttta 320

                                                                       
Query: 121 gagatttgctgttgcttctgttccctccatactccaatccttgtatgttcttgttagact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 321 gagatttgctgttgcttctgttccctccatactccaatccttgtatgtttttgctagact 380

                                                                       
Query: 181 aggaatccacacccactcaaagaccttcaatatctctaccaaccaccaaaatcagtacag 240
           | |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 atgaatccacactcactcaaagaccttcaatatctctaccaaccaccaaaatcagtgcag 440

                                                         
Query: 241 attattgtctctggcatttccaaagaaagtatatgagcaggaaatt 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attattgtctctggcatttccaaagaaagtatatgagcaggaaatt 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)