BAC Information

Click to search

BAC

Clone NameMSMg01-232G02
Chromosome19 (Build37)
Map Location 48,363,323 - 48,363,627
singlet/doubletsinglet
Overlap geneSorcs3
Upstream geneSh3pxd2a, Obfc1, Slk, Col17a1, 6330577E15Rik, D19Ertd652e, LOC677174, Gsto1, Gsto2, BC063749, Gm969, LOC670576
Downstream geneLOC100042896
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232G02.T7 (MSMg01no232_g02.b1)MSMg01-232G02.TJ (MSMg01no232_g02.g1)
ACCAG398909AG398910
length766755
length of high quality
(start - end)
277 (46 - 322)334 (78 - 411)
definitionCHROMAT_FILE: MSMg01no232_g02.b1 PHD_FILE: MSMg01no232_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:51 2005CHROMAT_FILE: MSMg01no232_g02.g1 PHD_FILE: MSMg01no232_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAACATTTTAGCTTCCATGTAGGAAGGAGAGCACGTGGCACAGTTT
TGTGTGTTTATCTTATTTCATTTGTGATAATGTCTTCCAGTTCCTTCCTT
GTTGCTGCAGGTCCATTTTTTTATGGCTAAGGCATGTTCCATTGTATATA
CCATATTTTCTTTTTCCAGTCATCTGCTGTTGGATACAGTAGTTGGCTCC
TGACCTTAACTTTTACAGGTAGTGCTGTAGTAAGCATGGGGATATAGGTA
AGTATGGGAATGTAGGGATGTTTTTTTTTNTTTNNNNTTNTNNNTNNNNN
NNNNNNTTTTTTTTTTTCCCCCNNCCGNCCCCCCNNNNNNNNNNNNNNNN
NNNNNNTNNNNNNTGGCCCCCCCAAAAAAAAAAAAAAATTCGGGGGGGGG
GGGGGTGCCTTTCTCGCTTCCACACTTCGCTTTCTACCCCCTCCCCCCCC
CCTTTTTTGCCTACTCCCCCCTATCCCCATATTTCTTCCCTCTTGTTCCT
TTCTACCTTCCCGTTCATTTTTTTTTCCTCTCCTTTCCACTGCATCCCTT
TCCCTTATCTTTTCCTTTTCCTCCTCATTCTCCCCTTTTTTTTCCTTATT
CCCCCTCTTTTATTCCCATTTTTGTTTTCACTTTTATCTACCCTCCATTT
TCGTGTTTTGTATTCTTCCCCCCCCCCTCTTTTTTTTTTTCCCTCCCCAC
CTCTTTCTCCTATCTG
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGCATATGAATCACACATCAGAG
GTAAGGAATATCAAAGCAAAAAGTTCGTCTCCGTGCATCTAACATTCCAG
TTTGGAGAATACAGTCAATAATTACAGTGGATAGCTGGGCAGTGGTCATG
CATCCTTTAATCCCAGCACTTGGGAGGCAGAGACAGGTAGATTTCTGAGT
TCAAGGCTAGCCTGGTCTACAGAGTGAGTTCCAGGACGGCCAGGGCTACA
CAGAGAAACCCTGTCTCAAAAAAACCAAATAATAATAATAATTACAGTGA
ATAAGTAAATTATATGTATGGCATAGAAAATATTATGAGTGGGGGGAAAG
TAGGAGAGGNNCCNNNCCCCCCCCTCCCAAAAAAAAAACCCNCCGGGCCC
CCCCACCCCACCCCCCCACAAACCCACCACCCCCCAACACACAACCACCC
CACCAACAACCCACCCCCAAACCAACCACCCCAAAACCCACACCCCCCCC
ACCCCACACACCCCAAACCCCCCCCCCACCAAACCCAATCAACACCCCCA
CCCCCACCCCCCCACGAACACCCCCCCCCCAAAAAACACCACACCCAAAC
AACCACCCCCACCACACCCCCCCCAAAACCAACAAACCCCCCCCACCCCA
CCCCACCAAAAACACACAACACCCCAACACCCTCCCCACACCCAANACCC
CCGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_g02.g1 MSMg01no232_g02.g1 CHROMAT_FILE:
MSMg01no232_g02.g1 PHD_FILE: MSMg01no232_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:51 2005
         (334 letters)



>mm_chr19_48363323_48364056
          Length = 734

 Score =  574 bits (297), Expect = e-168
 Identities = 303/305 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   gcatatgaatcacacatcagaggtaaggaatatcaaagcaaaaagttcgtctccgtgcat 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gcatatgaatcacacatcagaggtaaggaatatcaaagcaaaaagttcgtctccgtgcat 246

                                                                       
Query: 62  ctaacattccagtttggagaatacagtcaataattacagtggatagctgggcagtggtca 121
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| 
Sbjct: 245 ctaacattccagtttggagaatacagtcaataattacagtggatagccgggcagtggtcg 186

                                                                       
Query: 122 tgcatcctttaatcccagcacttgggaggcagagacaggtagatttctgagttcaaggct 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 tgcatcctttaatcccagcacttgggaggcagagacaggtagatttctgagttcaaggct 126

                                                                       
Query: 182 agcctggtctacagagtgagttccaggacggccagggctacacagagaaaccctgtctca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 agcctggtctacagagtgagttccaggacggccagggctacacagagaaaccctgtctca 66

                                                                       
Query: 242 aaaaaaccaaataataataataattacagtgaataagtaaattatatgtatggcatagaa 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  aaaaaaccaaataataataataattacagtgaataagtaaattatatgtatggcatagaa 6

                
Query: 302 aatat 306
           |||||
Sbjct: 5   aatat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)