BAC Information

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BAC

Clone NameMSMg01-232M11
Chromosome19 (Build37)
Map Location 42,979,289 - 42,979,597
singlet/doubletsinglet
Overlap geneLOC545291
Upstream genePgam1, Exosc1, Zdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik, 4933411K16Rik, BC023055, Pi4k2a, Avpi1, Marveld1, EG628994, LOC100042633, Zfyve27, Sfrp5, 4933417O08Rik, Crtac1, D19Ertd386e, Loxl4, 4833409A17Rik, Hps1
Downstream geneEG627624, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232M11.T7 (MSMg01no232_m11.b1)MSMg01-232M11.TJ (MSMg01no232_m11.g1)
ACCAG399180AG399181
length734735
length of high quality
(start - end)
317 (44 - 360)293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no232_m11.b1 PHD_FILE: MSMg01no232_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:21 2005CHROMAT_FILE: MSMg01no232_m11.g1 PHD_FILE: MSMg01no232_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAAAACCCTCTTGGAGGAGAAGTGCCCGGGCTGGTGGGTCTGGCCTC
TGTCCACTGAATGTACACAAACACCGGCTACTCCCGAGGGAGCTCACAAC
CGATTGCTTAGCTGTGGAGACTCACTTGTCCCTTCTTTCCCAGTGGCAGG
TCATCAGGGGAAAGGGCGGAGCCTGTGACAACACATGGGCATAGCGTAAC
TAACATGTGCTCTTTTCCTCAGGAAGACAGGCTCACGGCAGAAGGAGGTG
CCACTTTGCTAGCAGAAAGCTACAGAGGAACAAGGGATGTGGCTGAAAAG
TTATTTTCTGAGCCCACACCGCCCAGTAGAACCATTCTCATTCTGCCCCT
CGCCTTCCCCCCTTCCCTTCTTCACCCCACCTTTTTGAACTTTTGTTGTA
AAAGAGAAGACTTCAGGTCCAGCAGAAACGGACCCACAGATACAGAGATG
CCCCTAGGTGCTGTCCTCAAGTCCTCCTCCATTATCATCAGCTCTCACCA
TCATCAGTGTCAGAGTGGAGCCTTCACACTTGGTGACCTTCCATCAGTGA
CATGGAAAGTCCACACTTCACAGTAGGGTTTATCTGTGGTGCCCATTCTG
TGGTTTGGGATTGGCACAGAAGCAACCCACTGTTTAGCATCATTCAGAAT
AGTTTCCCTGCCCTAAAATCTTCTGTTTCTCTCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGCTCCACTGCACTCATTACCCTG
ACTCCCACTCACTGACTGCTGAACTTTCTCTCTCCCTATGCTGATCTCAC
AGAGCTTTTCTCCTGAGAGTTGGGTGTATCCTGTCTCTGATTCATTCTGT
CAAATATTTCTCTGGTTCATCAGTCTGTCTGCCCCTCAGTTAGACAATAT
TCTTTGGGATTAAAGGTGTGCACTGAAGGATTCCAACCAGAGGGATTAAA
GGTGTGTGACCTGTCTGCATTCCAGCCAGATCACACAGACCTTTTAAGGT
CTTTGGTTGTGATCCCTTGCCACCCCACCCATGTTGCCAGATTAAAATTT
CTATATACATGCCCACTTCCCCCTTTCAGTGCTGGGACCCCATCTGGCTT
GAACCTGTGTAGGTCTTATAGGTGCTACCCCAGTCTCTGTTCATATGTCA
TCAGTCTTGTTGGGTCTGTTTCCTTGGAGTCATCTCCACCTCTGGCTCCT
GCAATTTTTCTGCCTCTCCTTCACATAGATCCCTGAGTCTTGAGGAGGGG
TAACAAAGATATCTCATTTAGTCCTGAGTGCTCCTGCCCAGATGTAGGTC
TCTGTATCAGTTCTCACCTACTGCAAGAAGAAGCTTTTCTGACGTGGCTT
GAGTAACAATCTGATCTATGACCACATTCGGTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_m11.b1 MSMg01no232_m11.b1 CHROMAT_FILE:
MSMg01no232_m11.b1 PHD_FILE: MSMg01no232_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:21 2005
         (317 letters)



>mm_chr19_42979085_42979801
          Length = 717

 Score =  590 bits (305), Expect = e-173
 Identities = 308/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaaaccctcttggaggagaagtgcccgggctggtgggtctggcctctgtccac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaaaccctcttggaggagaagtgcccgggctggtgggtctggcctctgtccac 264

                                                                       
Query: 65  tgaatgtacacaaacaccggctactcccgagggagctcacaaccgattgcttagctgtgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgaatgtacacaaacaccggctactcccgagggagctcacaaccgattgcttagctgtgg 324

                                                                       
Query: 125 agactcacttgtcccttctttcccagtggcaggtcatcaggggaaagggcggagcctgtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agactcacttgtcccttctttcccagtggcaggtcatcaggggaaagggcggagcctgtg 384

                                                                       
Query: 185 acaacacatgggcatagcgtaactaacatgtgctcttttcctcaggaagacaggctcacg 244
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acaacacatgggcatggcgtaactaacatgtgctcttttcctcaggaagacaggctcacg 444

                                                                       
Query: 245 gcagaaggaggtgccactttgctagcagaaagctacagaggaacaagggatgtggctgaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcagaaggaggtgccactttgctagcagaaagctacagaggaacaagggatgtggctgaa 504

                    
Query: 305 aagttattt 313
           |||||||||
Sbjct: 505 aagttattt 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)