CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTTCCATACCATGTATTAGAATCATATGAGTGGCTGCTGGTTGT
CTAAATGTAAAGCTATAAAACAGTTCGCAAACCATTAGAGGCACAAGCCT
CACAGAATCCGATAACCTGGAAGAGAACACGCTAAGTCTCCTATATGCTG
TGGTCTTTCACAGTTTTGCCTGCACAGCCCACCCCTGTGTTCTAGTCTCC
TATCTTGTGTTTTTAAGGCCATAGCTCTGACATTGAATCCCAGAGTAGAG
CCATCCATGAATTAACCCTTTTGGAGCACAGCTGTCTAGGTCTGCTAGAT
TTTCTACAGGATGGCAACTCGGTTGCTTTCTTTTTCCTTTTCTCCTTGTG
TGCTTGTTTGTAACAAAGTTTCTTCATGTAGCCCAAGTTAGTCTTGAACT
CTCTGCAATCCTCCTACCTCAGTCTCCAGACTACTAGGTTACAGATGGGT
ACCACCACACCCAGCATGATTTTTTTTTTCTAAATTTTTCCTCCCCATGT
CTTTCTAGCTATCATAAGACTGGTTGCAGTGTTGTATGGCCTTATAGTAA
CAACATTTTCTGGATGCAAGCACTGTGGAAGAGGGGACTGTAGGAGGCAA
TGAGGTTATGTTGACAAGAAATCTATTAGAAATAAGTAGGCTTG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAATGGCTCAACAAGCTGAAGTGC
CCAAGTGAGGATGCCTCAGTCCCCCTTGGGAGAGAGAAGAAAGCAATCAC
AAGTGGGNGAGAGGGGTGGGACTTGAGAGGGAATGTGGATGAGGTGGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTNTNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCTTTTTTTTNTNNCNNNNCCCCCNCCCCCCC
CCCCCNCCTCTTTTTTTTTTCCCCCCCCCCCCCCCCCTCNNNNNNTTTTN
TTTTTTTTTTTTTTTTTTTTCCCCCCCCCCCTTATAAAAAAATTTATTTT
TTGGGGGCGCGCCATCCCCCTTCCCCCCCCCTTCTCTCTCTCCCTTCTCC
CCCTCTCTCTTCCTCCCATTCCTTCCTCCCCCTCCTCCCCTCTCCTTCCT
ACCCCTTCTCCCTCCTCCCCCCCTCCCCCTTCCCCCCCCCTCTACCTTTC
TCCCCTCTTTCTTCCTCTGTCATCCATTTCCCCCGCCCCATTCCTCTCCC
TTTTCTTTCCTCTCCTCCCTCACCCCGCTCCCTTGTTCCCTCCTTCTTCT
TTTCCTCCTCTCCCTTCTCTCCCCTCCCCCTCCTCCTCCC

Query= MSMg01no235_f17.b1 MSMg01no235_f17.b1 CHROMAT_FILE:
MSMg01no235_f17.b1 PHD_FILE: MSMg01no235_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:40 2005
         (625 letters)



>mm_chr19_29910403_29911431
          Length = 1029

 Score =  975 bits (504), Expect = 0.0
 Identities = 538/554 (97%), Gaps = 11/554 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacttcca-taccatgtattagaatcatatgagtggctgctggttgtctaaatgt 63
           |||||||||| || || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 553 gaattcactt-cattatcatgtattagaatcgtatgagtggctgctggttgtctaaatgt 495

                                                                       
Query: 64  aaagctataaaacagttcgcaaaccattagaggcacaagcctcacagaatccgataacct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aaagctataaaacagttcgcaaaccattagaggcacaagcctcacagaatccgataacct 435

                                                                       
Query: 124 ggaagagaacacgctaagtctcctatatgctgtggtctttcacagttttgcctgcacagc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ggaagagaacacgctaagtctcctatatgctgtggtctttcacagttttgcctgcacagc 375

                                                                       
Query: 184 ccacccctgtgttctagtctcctatcttgtgtttttaaggc----catagctctgacatt 239
           |||||||||||||||||||||||||||||||||||||||||    |||||||||||||||
Sbjct: 374 ccacccctgtgttctagtctcctatcttgtgtttttaaggccatacatagctctgacatt 315

                                                                       
Query: 240 gaatcccagagtagagccatccatgaattaacccttttggagcacagctgtctaggtctg 299
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 314 gaatcccagagtagagccatccatgaattaacccttctggagcacagctgtctaggtctg 255

                                                                       
Query: 300 ctagattttctacaggatggcaactcggttgctttctttttcctt-----ttctccttgt 354
           | |||||||||||||||| ||||||||||||||||||||||||||     ||||||||||
Sbjct: 254 ccagattttctacaggattgcaactcggttgctttctttttccttttctcttctccttgt 195

                                                                       
Query: 355 gtgcttgtttgtaacaaagtttcttcatgtagcccaagttagtcttgaactctctgcaat 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gtgcttgtttgtaacaaagtttcttcatgtagcccaagttagtcttgaactctctgcaat 135

                                                                       
Query: 415 cctcctacctcagtctccagactactaggttacagatgggtaccaccacacccagcatga 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 cctcctacctcagtctccagactactaggttacagatgggtaccaccacacccagcatga 75

                                                                       
Query: 475 ttttttttttctaaatttttcctccccatgtctttctagctatcataagactggttgcag 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  ttttttttttctaaatttttcctccccatgtctttctagctatcataagactggttgcag 15

                         
Query: 535 tgttgtatggcctt 548
           ||||||||||||||
Sbjct: 14  tgttgtatggcctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1029
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1019
Effective search space:   626685
Effective search space used:   626685
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)