Query= MSMg01no235_l12.b1 MSMg01no235_l12.b1 CHROMAT_FILE:
MSMg01no235_l12.b1 PHD_FILE: MSMg01no235_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:07 2005
(320 letters)
>mm_chr19_18495227_18495946
Length = 720
Score = 603 bits (312), Expect = e-177
Identities = 315/316 (99%)
Strand = Plus / Plus
Query: 5 gaattcaacgtgtactcattcctgtctggtcgttgaaaaggtgtctcccctaagatgtct 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 205 gaattcaacgtgtactcattcctgtctggtcgttgaaaaggtgtctcccctaagatatct 264
Query: 65 tttagaatggcatccttgacatttttctctcagcaattctgatgagccttattgatctct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttagaatggcatccttgacatttttctctcagcaattctgatgagccttattgatctct 324
Query: 125 ggtggccaaggcttccagactattgtttcaaaaatcacttgaaagaagccatgagaaggt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggtggccaaggcttccagactattgtttcaaaaatcacttgaaagaagccatgagaaggt 384
Query: 185 ataattatataacataatggtttcttgtgggtagagctggggggttaggcaatctcagac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataattatataacataatggtttcttgtgggtagagctggggggttaggcaatctcagac 444
Query: 245 aatggatttcttataatacaatgatactcatcatcataataatgccatttcatctgctac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatggatttcttataatacaatgatactcatcatcataataatgccatttcatctgctac 504
Query: 305 caatttgaccaacata 320
||||||||||||||||
Sbjct: 505 caatttgaccaacata 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_l12.g1 MSMg01no235_l12.g1 CHROMAT_FILE:
MSMg01no235_l12.g1 PHD_FILE: MSMg01no235_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:07 2005
(556 letters)
>mm_chr19_18577334_18578289
Length = 956
Score = 795 bits (411), Expect = 0.0
Identities = 443/465 (95%), Gaps = 18/465 (3%)
Strand = Plus / Minus
Query: 1 ccagaacctgcttgggtcctccttagaatcaggctcctggagaactctcactcttgccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ccagaacctgcttgggtcctccttagaatcaggctcctggagaactctca---------- 398
Query: 61 gtccccacctcttgccctgtccccacctggtctctaactttgtctttggtgcagtgcaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 --------ctcttgccctgtccccacctggtctctaactttgtctttggtgcagtgcaga 346
Query: 121 gtcttttgctttgacaccggctttcagggggctgcccacactggtcagctgtggtcctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gtcttttgctttgacaccggctttcagggggctgcccacactggtcagctgtggtcctgc 286
Query: 181 ccagggcccacgtctggaactttagggcagtggcttgtttgttctgccacctgacttctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ccagggcccacgtctggaactttagggcagtggcttgtttgttctgccacctgacttctc 226
Query: 241 atgtgtgtctaagaagaacttgctgatctttctgtctgttcaactcttttcttgttattg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 atgtgtgtctaagaagaacttgctgatctttctgtctgttcaactcttttcttgttattg 166
Query: 301 cagagtggagaatcctccaggcttcttacctgctggcatggaatctgagagaaacattct 360
|||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 165 cagagtggagaaccccccaggcttcttacctgctgggatggaatctgagagaaacattct 106
Query: 361 ttctataagaagaggtttatcttggtttctgtaatttgctgtgttggtttcctgattgct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 105 ttctataagaagaggtttatcttggtttctgtaatttgctgtgttggtttcctcattgct 46
Query: 421 ctgaaatcctgatatgtattctgatacgattactattctgggcat 465
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 ctgaaatcctgatatgtattctgatacgattactattctgggcat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
