BAC Information

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BAC

Clone NameMSMg01-236A21
Chromosome19 (Build37)
Map Location 38,899,228 - 38,899,898
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20, LOC100042483, Plce1, EG667587, Noc3l
Downstream geneTbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66, Cyp2c29, Cyp2c38, Cyp2c39, C730004C24Rik, 9030012A22Rik, Cyp2c40
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236A21.T7 (MSMg01no236_a21.b1)MSMg01-236A21.TJ (MSMg01no236_a21.g1)
ACCAG401431AG401432
length793755
length of high quality
(start - end)
194 (129 - 322)671 (79 - 749)
definitionCHROMAT_FILE: MSMg01no236_a21.b1 PHD_FILE: MSMg01no236_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:31 2005CHROMAT_FILE: MSMg01no236_a21.g1 PHD_FILE: MSMg01no236_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATAGAAGTTGCAGAGGAAGGATTGTAGCGCCAGAATGGTGAAGA
ACACCATAAGAAAACCCACATATATCCCTAACCTGGGCCTATAGGGGCTC
CCAGAGCCTGAATCAGGGAGCCTGCATAGGGTAGACCTAGGTCCTATGCA
TATATGTTACGGTTGTGTGGCTTGGCCTAACAGGGGGATCAGGAGCTATC
TTTGGCTCTGTTGCCTGCATTTGGGACCCTTTTCTCCTACTGGGCTGCCT
TGTTTAGCTTCAATAGGAGAAGATGTTCCTAGTCCTACTGCAACTTGATA
TGTCAAGGCTGGTTGATATCCATGGCAGGCCTCTCCTTTTTTCAAGAGAA
TCAGAGGAGAAATGATGGGGTGAGCTAAGAAAAAGGGAGGGGAGGGGAGG
TAGAAGGGAAGACCTGAGTGTAGAATTATTTTTTCTTCCTCTTGGTTTTG
CTGTCTGTGTCGTGTGTATGAGTTCCTCTTTTTCTTTCCAGTGCTGTGCG
CGCTTTCCACTGGGGGGGTCCCCGTTGGTCTCTGGTGTTGTCCGTCTCTT
TTATTATATCCGTTTTTTCGCTCTTTGCTTTCTCCGGTTGGTTGTTTGTG
GTTGCTCGCGCTCGTTTGCCTTTTTGCGCCGGTGGGTTACGCTTGGCCGA
TCGTCGTTTGCCTATGCTCGTTGTGTAGTTGTCGCTTGTGTTGTTGGTGT
TAAGTGGTGATGTGTTTGTTGTTTTTGTTGTTGCTGCTCCGTN
TCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGCTGATCTTCAGAATACCC
TCTGCTAAGCGTGTGAGCAGACCAGCTTCCTAACTTGTAACCAGGGCAAG
GACTTCTCTTTGATGATAGGTTTAGGAAAGAATGCATTAGAAGGAGCAGG
GGTGGACTGTGGGATTTGTGAGAAAGATGCTGACACCTTAGATGTTAGTT
TTACTCTATAGTGTCTTCCTGGATCAACTATACTTACCAGCAACACGAGA
GTGAAGACTTGCTGACAATACATCCTTGTTTGAAAGACATTCTTTCACAG
ACAGTAACTACCAGAGTCTGGTGCAAAAGGGAGGGTAAAGAAGTTGTGAC
GTTGTGTTGCCCCAGGGTTGTTCAGAAACAGCTCATAACTTTGTGCGTGG
AACAACCTTCTCTTCCCTAGGGATTTTGAAAACCAATGAAGAGAGAGCGG
CTCTTAACTGCCCATGCAAGTATGTGATGAGGAAAGTCGAGGTTTAGTTT
ATCAACACAAATCTTAAATGAGAAGGAACAAATATCATGACCCTAGGAAA
ATCTCAACTTAATTTTTCCCTTGTCTACATTACTGCAGATTGAGAAAGAT
ATCTGACCCCCTTTTGCTGAACAAAACTACTCTCTCCAATGTGACTGGCA
CATTTCCCAGCGAATCTGTAATTCAGAATAATACCGAATGTCCCAAATCT
TATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_a21.g1 MSMg01no236_a21.g1 CHROMAT_FILE:
MSMg01no236_a21.g1 PHD_FILE: MSMg01no236_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:31 2005
         (671 letters)



>mm_chr19_38899028_38900098
          Length = 1071

 Score = 1259 bits (651), Expect = 0.0
 Identities = 666/671 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagctgatcttcagaataccctctgctaagcgtgtgagcagaccagcttcctaacttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 871 aaagctgatcttcagaataccctctgctaagcgtgtgagcagaccagtttcctaacttgt 812

                                                                       
Query: 61  aaccagggcaaggacttctctttgatgataggtttaggaaagaatgcattagaaggagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 aaccagggcaaggacttctctttgatgataggtttaggaaagaatgcattagaaggagca 752

                                                                       
Query: 121 ggggtggactgtgggatttgtgagaaagatgctgacaccttagatgttagttttactcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 ggggtggactgtgggatttgtgagaaagatgctgacaccttagatgttagttttactcta 692

                                                                       
Query: 181 tagtgtcttcctggatcaactatacttaccagcaacacgagagtgaagacttgctgacaa 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 691 tagtgtcttcctggatcaactatacttaccagcaacatgagagtgaagacttgctgacaa 632

                                                                       
Query: 241 tacatccttgtttgaaagacattctttcacagacagtaactaccagagtctggtgcaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tacatccttgtttgaaagacattctttcacagacagtaactaccagagtctggtgcaaaa 572

                                                                       
Query: 301 gggagggtaaagaagttgtgacgttgtgttgccccagggttgttcagaaacagctcataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gggagggtaaagaagttgtgacgttgtgttgccccagggttgttcagaaacagctcataa 512

                                                                       
Query: 361 ctttgtgcgtggaacaaccttctcttccctagggattttgaaaaccaatgaagagagagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ctttgtgcgtggaacaaccttctcttccctagggattttgaaaaccaatgaagagagagc 452

                                                                       
Query: 421 ggctcttaactgcccatgcaagtatgtgatgaggaaagtcgaggtttagtttatcaacac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ggctcttaactgcccatgcaagtatgtgatgaggaaagtcgaggtttagtttatcaacac 392

                                                                       
Query: 481 aaatcttaaatgagaaggaacaaatatcatgaccctaggaaaatctcaacttaatttttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 aaatcttaaatgagaaggaacaaatatcatgaccctaggaaaatctcaacttaatttttc 332

                                                                       
Query: 541 ccttgtctacattactgcagattgagaaagatatctgacccccttttgctgaacaaaact 600
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 331 ccttgcctacattactgcagattgagaaagatatctgacccccttttgctgaaaaaaact 272

                                                                       
Query: 601 actctctccaatgtgactggcacatttcccagcgaatctgtaattcagaataataccgaa 660
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 271 actctctccaatgtgactggcacatttcccagtgaatctgtaattcagaataataccgaa 212

                      
Query: 661 tgtcccaaatc 671
           |||||||||||
Sbjct: 211 tgtcccaaatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)