Query= MSMg01no237_l20.b1 MSMg01no237_l20.b1 CHROMAT_FILE:
MSMg01no237_l20.b1 PHD_FILE: MSMg01no237_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:38 2005
(189 letters)
>mm_chr19_36632857_36633445
Length = 589
Score = 350 bits (181), Expect = e-101
Identities = 187/189 (98%)
Strand = Plus / Plus
Query: 1 gaagcgtttaagagaaaacacaaggtgtatgcagaggacaagagtgacaagtttgtgttg 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 gaagcgtttaagagaaaacacaaggtgtgtgcagaggacaagagtgacaagtttgtgttg 260
Query: 61 tgtatgaatgggcttgctggaacctctggaccatgatggagctaccagtcactgaacata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtatgaatgggcttgctggaacctctggaccatgatggagctaccagtcactgaacata 320
Query: 121 tgttatgcttagctttgcactaactggggtagaaacacagacaaggcttaaccagaatgt 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 tgttatgcttagctttgcactaactggggtagaaacacagacaaggcttagccagaatgt 380
Query: 181 cgcacctcc 189
|||||||||
Sbjct: 381 cgcacctcc 389
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space: 105161
Effective search space used: 105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no237_l20.g1 MSMg01no237_l20.g1 CHROMAT_FILE:
MSMg01no237_l20.g1 PHD_FILE: MSMg01no237_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:38 2005
(601 letters)
>mm_chr19_36731986_36732983
Length = 998
Score = 714 bits (369), Expect = 0.0
Identities = 452/493 (91%), Gaps = 30/493 (6%)
Strand = Plus / Minus
Query: 2 ggaattccccaggtttgctgacatcattctgctcgctgtcccaggtgggtgactcagttg 61
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976 ggaattccccaggtttgatgacatcattctgctcgctgtcccaggtgggtgactcagttg 917
Query: 62 ggtttttgctggatcttgtaagtgcttgattcgattacacttgttctccatctgcccagt 121
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 ggtttttgctggatgttgtaagtgcttgattcgattacacttgttctccatctgcccagt 857
Query: 122 tttatcaacatatagaatgttctgcctgcttatatctaataatctcacataagtgggcat 181
||||||| | || ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 856 tttatcagcgtagagaatgttctgcctgcttatatctaataatctcacatgagtgggcat 797
Query: 182 ggctgttgtggatcatatttcatgtatggcaatagtttatatttggtatttttaaatatt 241
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 796 ggctgttgtggatcatatttcatgtatggcaatagtttatatttggta-ttttaaatatt 738
Query: 242 a-tttttgaaactatagcaaaaaataaaataattccaaccccagaaaacaaacaaacaaa 300
| ||||||||||||||| ||||| |||| |||||||||||||||||||||||
Sbjct: 737 attttttgaaactatag--aaaaa-aaaa-----ccaaccccagaaaacaaacaaac--- 689
Query: 301 caaacaaacaaaacaacaacaacaaaaaaccaaaccaaaactccccagtccaggtttata 360
||| |||||||||||| |||||| |||||||||| ||||||||||||
Sbjct: 688 ------aac--aacaacaacaac--aaaacc------aaactccccactccaggtttata 645
Query: 361 agacaaataactaacttcttacatttaagaggaaactaaattgttaagatataattttgt 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 644 agacaaataactaacttcttacatttaaaaggaaactaaattgttaagatataatcttgt 585
Query: 421 taaatgctcataaaatgtctcaactgatttttgctgggaagaaaaaaaaatcagttttta 480
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 584 taaatgctcataaaatgtctaaactgatttttgctgggaagaaaaaaaaatcag-cttta 526
Query: 481 agagtcaagagaa 493
|||||||||||||
Sbjct: 525 agagtcaagagaa 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 998
Length adjustment: 10
Effective length of query: 591
Effective length of database: 988
Effective search space: 583908
Effective search space used: 583908
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
