BAC Information

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BAC

Clone NameMSMg01-260A04
Chromosome19 (Build37)
Map Location 40,346,334 - 40,346,691
singlet/doubletsinglet
Overlap genenone
Upstream geneCyp2c29, Cyp2c38, Cyp2c39, C730004C24Rik, 9030012A22Rik, Cyp2c40, LOC100043108, LOC100042523, Cyp2c37, Cyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923, Pdlim1
Downstream geneLOC435599, Sorbs1, A930028N01Rik, Aldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk, LOC100043155, Dntt, Tmem10, Tll2, Tm9sf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260A04.T7 (MSMg01no260_a04.b1)MSMg01-260A04.TJ (MSMg01no260_a04.g1)
ACCAG402790AG402791
length741748
length of high quality
(start - end)
299 (83 - 381)346 (76 - 421)
definitionCHROMAT_FILE: MSMg01no260_a04.b1 PHD_FILE: MSMg01no260_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:58 2005CHROMAT_FILE: MSMg01no260_a04.g1 PHD_FILE: MSMg01no260_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTCTCTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAG
AATCCGCGGAATTCCATTCATTTTCCTGGACATCTAGCCATCTCGCCTGT
CATTCCCTACACCTAATCCTGAACCCCTCATTCTCCTCCCAGTACCCTCT
CCCTTCCAACTCCCTCCCTCCATCTGCTTTCTATGACTATTTTATTCCCC
CTTCTAAGTGAGATTCAAACTTCCTTGCTTAGGCCTCAATTCTTGTTTAG
CTTCTTTGGCTCTGTGGAGTGTAGCATGGTACCTGTATTTTATGGCTAAT
TTATAAATGAATACATGCCATGCATGCCCTTTTGTTACTGGCTTACAGAT
TATTGCTTGCCCATGGGATAGATCCCCAGTTGTACTGGTCACTGGATGCA
CTTTTCTTCAGTCTCTGCTCCATTTCCCATCCCTACATTTCTATTACACT
CATACAATACTGAGTCAATTTTTCTCCCTAAATGAAATGAGAAAGTTTAT
TGATTATTTTTTTATTTTAACATTTTTATTATACATTTCTTTCTTTACAT
TTCACACGCTATCTCATATTCTTCTATACCCTTCCCCTATTCTGCTCCTT
AACACTCCCATTCCCACTTCCTTCGCTCTGTCATTTTCCCCTGTTTCGCG
CCATATGACCTCCGCACTATTACGTTTCCTCTTCTTCTTATTGTCGCTTT
AACAAGCCATCCTTCTGCTATTTCTCGTATCTATAGTACCG
CCCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTCAGGAATTCACCTACCTTCAATTTCAACTCCA
GCCAGGAGGAAAGGTTTCTAGGAACTTCGTAGAGCCTAATTATAACCCCC
CCCCCCACCGTTATAGTCCCATTAGCATTGGAAAGCTTCCAGGGTGGCCC
AAGGAGCCTGGGAAATGGTTCAGTAGCAACCCCGAGTTGTTGCGTAGCCT
TAGGGGTGCTTTATAATCTCGGGCAGCCTCAATGACTTTATCTCTAACAT
GGGACTAGAGATAAAGCGCCTAATTGCGTCTGGTGAGATCACTTGAAAGC
GCCTCTTAAACGGCTCTGCGGTTTCCAAAAGTGTAAACCGCTCTGACCTC
GCTCAATCCTTTTCGACTTTTTGCAAAGCACAACGCGTGGGTTTGTAAGG
TCCGCTGTAGGTGGGGACAAGGCTTAGGTTTCACCTAGCTTTCATGCCGG
GCTGGGAGTAGCAAGAATGCTGTGTGTATGGCGCCTAGGAGGTGCGTTTA
GGAGGTTGTGCTCTTATGCTCGCCCCTGCTGTGATCTAGTCGATTACGCT
ATCTCCCTTATTACATTCCGGTTTCACCTCCTGGCGTCCTCTTTCCACCG
CTTGTTTTTTCTCTCCCATATTCTTTTCTCTTTATTCGCTTCCCTCCCGC
CTCCGCTTTTTATTCTTTTTTCCTCCCCACCTTCCTTTGTCCTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_a04.g1 MSMg01no260_a04.g1 CHROMAT_FILE:
MSMg01no260_a04.g1 PHD_FILE: MSMg01no260_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:58 2005
         (346 letters)



>mm_chr19_40346065_40346811
          Length = 747

 Score =  607 bits (314), Expect = e-178
 Identities = 342/358 (95%), Gaps = 12/358 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacctaccttcaatttcaactccagccaggaggaaaggtttctaggaacttcgtagagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tcacctaccttcaatttcaactccagccaggaggaaaggtttctaggaacttcgtagagc 568

                                                                       
Query: 61  ctaattata-----------accccccccccc-accgttatagtcccattagcattggaa 108
           |||||||||           |||||||||||| |||||||||||||||||||||||||||
Sbjct: 567 ctaattataaccccctgactacccccccccccaaccgttatagtcccattagcattggaa 508

                                                                       
Query: 109 agcttccagggtggcccaaggagcctgggaaatggttcagtagcaaccccgagttgttgc 168
           |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 507 agcttccagggtggcccaaggagcctggaaaatgattcagtagcaaccccgagttgttgc 448

                                                                       
Query: 169 gtagccttaggggtgctttataatctcgggcagcctcaatgactttatctctaacatggg 228
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 447 gtagccttaggggtgctttataatctcgggcagcctcaatgactttatctctaaaatggg 388

                                                                       
Query: 229 actagagataaagcgcctaattgcgtctggtgagatcacttgaaagcgcctcttaaacgg 288
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 387 actagagataaagcgcctaattgcgtcaggtgagatcacttgaaagcgcctcttaaacgg 328

                                                                     
Query: 289 ctctgcggtttccaaaagtgtaaaccgctctgacctcgctcaatccttttcgactttt 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctctgcggtttccaaaagtgtaaaccgctctgacctcgctcaatccttttcgactttt 270


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 747
Length adjustment: 9
Effective length of query: 337
Effective length of database: 738
Effective search space:   248706
Effective search space used:   248706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)